PlantSME Plant secondary metabolism enzyme database

Trema orientale (trema_orientale)

Imported from atlas release summary for Trema orientale.

1868
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.76% Alkaloid pathway 19.54% Phenylpropanoid pathway 19.06% Flavonoid pathway 14.56% Rosmarinic acid pathway 11.13% Steroid pathway 5.94%
Family Distribution
C4H 6.56% BAHD 5.85% C3'H/CYP98A 5.69% UGT 5.26% 7DLGT 4.73% UFGT 4.55% IFS 3.64% CYP76 3.57%
Other Families 60.14%
More Families (98)
POD 141 3.22% T3O 131 3.0% F3H 128 2.93% 4CL 123 2.81% DWF4/CYP90B1 100 2.29% F3'H/CYP75B 88 2.01% BR6OX2/CYP85A2 82 1.88% CAD 79 1.81% HCT 75 1.72% H6H 73 1.67% STR 69 1.58% CODM/T6ODM 68 1.55% CAS 60 1.37% NMT 59 1.35% CYP71 54 1.23% SMT1/SMT2/SMT3 53 1.21% TRI/TRII 49 1.12% LAC 45 1.03% CYP90D1 45 1.03% RAS 44 1.01% TAT 44 1.01% GS 43 0.98% T16H 42 0.96% BBE 40 0.91% G8O/G8H 39 0.89% IFR 39 0.89% CSE 37 0.85% SGD 35 0.8% PMT 34 0.78% ANR 32 0.73% TPS 31 0.71% NCS 30 0.69% 7DLH 29 0.66% COMT 29 0.66% IO 28 0.64% GES 28 0.64% FNS 27 0.62% F5H/CYP84A 26 0.59% LAMT 25 0.57% CCR 25 0.57% PYKS 24 0.55% PAL 24 0.55% 16OMT 23 0.53% SLS 22 0.5% DFR 19 0.43% CPD/CYP90A1 18 0.41% COR 16 0.37% F3'5'H/CYP75A 15 0.34% ANS/LDOX 15 0.34% HPPR 14 0.32% 8HGO 13 0.3% CNMT 12 0.27% BR6OX1/CYP85A1 10 0.23% AACT 10 0.23% CYP719 9 0.21% MPO 9 0.21% CHS 9 0.21% DET2 9 0.21% FPPS 9 0.21% TYDC_DDC 8 0.18% CYP80B1 8 0.18% ISY 7 0.16% CCoAOMT 7 0.16% CYP51G1 7 0.16% CPR 6 0.14% SQS/FDFT1 6 0.14% SQE 6 0.14% CHI 5 0.11% ROT3/CYP90C1 5 0.11% SMO1/SMO2 4 0.09% GGPPS 4 0.09% DXS 4 0.09% CYP80F1 3 0.07% XMT_MXMT_DXMT 3 0.07% MVK 3 0.07% HMGR 3 0.07% MVD 3 0.07% TDC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% DWF7 2 0.05% HDS/IspG 2 0.05% IDI 2 0.05% HMGS 2 0.05% MCT/IspD 2 0.05% CMK/IspE 2 0.05% ODC 1 0.02% ADC 1 0.02% FLS 1 0.02% DWF1 1 0.02% FK 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HYD1 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02% PMK 1 0.02% GPPS 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 556 20 BAHD (218) View species results
Alkaloid pathway 365 25 7DLGT (96) View species results
Phenylpropanoid pathway 356 13 POD (138) View species results
Flavonoid pathway 272 13 UFGT (190) View species results
Rosmarinic acid pathway 208 7 C4H (89) View species results
Steroid pathway 111 11 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1612 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANS/LDOX
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Gene Pathway Family Confidence Status Best Target
PON32197.1[Trema Flavonoid ANS/LDOX low borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
PON40958.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
PON40961.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00003__sp_O04274_LDOX_PERFR
PON43384.1[Trema Flavonoid ANS/LDOX medium pass ANS_LDOX__00004__sp_O80449_JOX4_ARATH
PON61013.1[Trema Flavonoid ANS/LDOX medium pass ANS_LDOX__00004__sp_O80449_JOX4_ARATH
PON66642.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
PON66652.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
PON92082.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
PON93128.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
POO01326.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
POO01518.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC
POO03038.1[Trema Flavonoid ANS/LDOX low borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
POO03039.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
POO03043.1[Trema Flavonoid ANS/LDOX medium borderline ANS_LDOX__00004__sp_O80449_JOX4_ARATH
POO03049.1[Trema Flavonoid ANS/LDOX medium pass ANS_LDOX__00004__sp_O80449_JOX4_ARATH