Trema orientale (trema_orientale)
Imported from atlas release summary for Trema orientale.
1868
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1868
Candidate Genes
C4H
6.56%
BAHD
5.85%
C3'H/CYP98A
5.69%
UGT
5.26%
7DLGT
4.73%
UFGT
4.55%
IFS
3.64%
CYP76
3.57%
Other Families
60.14%
More Families (98)
POD
141
3.22%
T3O
131
3.0%
F3H
128
2.93%
4CL
123
2.81%
DWF4/CYP90B1
100
2.29%
F3'H/CYP75B
88
2.01%
BR6OX2/CYP85A2
82
1.88%
CAD
79
1.81%
HCT
75
1.72%
H6H
73
1.67%
STR
69
1.58%
CODM/T6ODM
68
1.55%
CAS
60
1.37%
NMT
59
1.35%
CYP71
54
1.23%
SMT1/SMT2/SMT3
53
1.21%
TRI/TRII
49
1.12%
LAC
45
1.03%
CYP90D1
45
1.03%
RAS
44
1.01%
TAT
44
1.01%
GS
43
0.98%
T16H
42
0.96%
BBE
40
0.91%
G8O/G8H
39
0.89%
IFR
39
0.89%
CSE
37
0.85%
SGD
35
0.8%
PMT
34
0.78%
ANR
32
0.73%
TPS
31
0.71%
NCS
30
0.69%
7DLH
29
0.66%
COMT
29
0.66%
IO
28
0.64%
GES
28
0.64%
FNS
27
0.62%
F5H/CYP84A
26
0.59%
LAMT
25
0.57%
CCR
25
0.57%
PYKS
24
0.55%
PAL
24
0.55%
16OMT
23
0.53%
SLS
22
0.5%
DFR
19
0.43%
CPD/CYP90A1
18
0.41%
COR
16
0.37%
F3'5'H/CYP75A
15
0.34%
ANS/LDOX
15
0.34%
HPPR
14
0.32%
8HGO
13
0.3%
CNMT
12
0.27%
BR6OX1/CYP85A1
10
0.23%
AACT
10
0.23%
CYP719
9
0.21%
MPO
9
0.21%
CHS
9
0.21%
DET2
9
0.21%
FPPS
9
0.21%
TYDC_DDC
8
0.18%
CYP80B1
8
0.18%
ISY
7
0.16%
CCoAOMT
7
0.16%
CYP51G1
7
0.16%
CPR
6
0.14%
SQS/FDFT1
6
0.14%
SQE
6
0.14%
CHI
5
0.11%
ROT3/CYP90C1
5
0.11%
SMO1/SMO2
4
0.09%
GGPPS
4
0.09%
DXS
4
0.09%
CYP80F1
3
0.07%
XMT_MXMT_DXMT
3
0.07%
MVK
3
0.07%
HMGR
3
0.07%
MVD
3
0.07%
TDC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
DWF7
2
0.05%
HDS/IspG
2
0.05%
IDI
2
0.05%
HMGS
2
0.05%
MCT/IspD
2
0.05%
CMK/IspE
2
0.05%
ODC
1
0.02%
ADC
1
0.02%
FLS
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
DXR
1
0.02%
HDR/IspH
1
0.02%
PMK
1
0.02%
GPPS
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 556 | 20 | BAHD (218) | View species results |
| Alkaloid pathway | 365 | 25 | 7DLGT (96) | View species results |
| Phenylpropanoid pathway | 356 | 13 | POD (138) | View species results |
| Flavonoid pathway | 272 | 13 | UFGT (190) | View species results |
| Rosmarinic acid pathway | 208 | 7 | C4H (89) | View species results |
| Steroid pathway | 111 | 11 | CAS (57) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1612 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 375 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PON34200.1[Trema | Alkaloid | PMT | medium | pass |
| PON34201.1[Trema | Alkaloid | PMT | medium | pass |
| PON36980.1[Trema | Alkaloid | PMT | low | borderline |
| PON42597.1[Trema | Alkaloid | PMT | medium | pass |
| PON43514.1[Trema | Alkaloid | PMT | medium | pass |
| PON43845.1[Trema | Alkaloid | PMT | medium | pass |
| PON47908.1[Trema | Alkaloid | PMT | low | borderline |
| PON48053.1[Trema | Alkaloid | PMT | low | borderline |
| PON81395.1[Trema | Alkaloid | PMT | medium | pass |
| PON82141.1[Trema | Alkaloid | PMT | low | borderline |
| PON83704.1[Trema | Alkaloid | PMT | low | borderline |
| PON84326.1[Trema | Alkaloid | PMT | low | borderline |
| PON86291.1[Trema | Alkaloid | PMT | low | borderline |
| PON86569.1[Trema | Alkaloid | PMT | low | borderline |
| PON88778.1[Trema | Alkaloid | PMT | medium | pass |
| PON88780.1[Trema | Alkaloid | PMT | medium | pass |
| PON89200.1[Trema | Alkaloid | PMT | low | borderline |
| PON89335.1[Trema | Alkaloid | PMT | low | borderline |
| PON89338.1[Trema | Alkaloid | PMT | medium | pass |
| PON89341.1[Trema | Alkaloid | PMT | low | borderline |
| PON92372.1[Trema | Alkaloid | PMT | medium | pass |
| PON92587.1[Trema | Alkaloid | PMT | low | borderline |
| PON92588.1[Trema | Alkaloid | PMT | low | borderline |
| PON93361.1[Trema | Alkaloid | PMT | medium | borderline |
| PON93397.1[Trema | Alkaloid | PMT | low | borderline |
| PON94765.1[Trema | Alkaloid | PMT | medium | pass |
| PON94766.1[Trema | Alkaloid | PMT | medium | pass |
| PON95416.1[Trema | Alkaloid | PMT | medium | pass |
| PON95724.1[Trema | Alkaloid | PMT | low | borderline |
| PON96850.1[Trema | Alkaloid | PMT | medium | borderline |
| PON98926.1[Trema | Alkaloid | PMT | medium | borderline |
| POO02205.1[Trema | Alkaloid | PMT | medium | pass |
| POO03026.1[Trema | Alkaloid | PMT | low | borderline |
| POO03396.1[Trema | Alkaloid | PMT | low | borderline |