PlantSME Plant secondary metabolism enzyme database

Trema orientale (trema_orientale)

Imported from atlas release summary for Trema orientale.

1868
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.76% Alkaloid pathway 19.54% Phenylpropanoid pathway 19.06% Flavonoid pathway 14.56% Rosmarinic acid pathway 11.13% Steroid pathway 5.94%
Family Distribution
C4H 6.56% BAHD 5.85% C3'H/CYP98A 5.69% UGT 5.26% 7DLGT 4.73% UFGT 4.55% IFS 3.64% CYP76 3.57%
Other Families 60.14%
More Families (98)
POD 141 3.22% T3O 131 3.0% F3H 128 2.93% 4CL 123 2.81% DWF4/CYP90B1 100 2.29% F3'H/CYP75B 88 2.01% BR6OX2/CYP85A2 82 1.88% CAD 79 1.81% HCT 75 1.72% H6H 73 1.67% STR 69 1.58% CODM/T6ODM 68 1.55% CAS 60 1.37% NMT 59 1.35% CYP71 54 1.23% SMT1/SMT2/SMT3 53 1.21% TRI/TRII 49 1.12% LAC 45 1.03% CYP90D1 45 1.03% RAS 44 1.01% TAT 44 1.01% GS 43 0.98% T16H 42 0.96% BBE 40 0.91% G8O/G8H 39 0.89% IFR 39 0.89% CSE 37 0.85% SGD 35 0.8% PMT 34 0.78% ANR 32 0.73% TPS 31 0.71% NCS 30 0.69% 7DLH 29 0.66% COMT 29 0.66% IO 28 0.64% GES 28 0.64% FNS 27 0.62% F5H/CYP84A 26 0.59% LAMT 25 0.57% CCR 25 0.57% PYKS 24 0.55% PAL 24 0.55% 16OMT 23 0.53% SLS 22 0.5% DFR 19 0.43% CPD/CYP90A1 18 0.41% COR 16 0.37% F3'5'H/CYP75A 15 0.34% ANS/LDOX 15 0.34% HPPR 14 0.32% 8HGO 13 0.3% CNMT 12 0.27% BR6OX1/CYP85A1 10 0.23% AACT 10 0.23% CYP719 9 0.21% MPO 9 0.21% CHS 9 0.21% DET2 9 0.21% FPPS 9 0.21% TYDC_DDC 8 0.18% CYP80B1 8 0.18% ISY 7 0.16% CCoAOMT 7 0.16% CYP51G1 7 0.16% CPR 6 0.14% SQS/FDFT1 6 0.14% SQE 6 0.14% CHI 5 0.11% ROT3/CYP90C1 5 0.11% SMO1/SMO2 4 0.09% GGPPS 4 0.09% DXS 4 0.09% CYP80F1 3 0.07% XMT_MXMT_DXMT 3 0.07% MVK 3 0.07% HMGR 3 0.07% MVD 3 0.07% TDC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% DWF7 2 0.05% HDS/IspG 2 0.05% IDI 2 0.05% HMGS 2 0.05% MCT/IspD 2 0.05% CMK/IspE 2 0.05% ODC 1 0.02% ADC 1 0.02% FLS 1 0.02% DWF1 1 0.02% FK 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HYD1 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02% PMK 1 0.02% GPPS 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 556 20 BAHD (218) View species results
Alkaloid pathway 365 25 7DLGT (96) View species results
Phenylpropanoid pathway 356 13 POD (138) View species results
Flavonoid pathway 272 13 UFGT (190) View species results
Rosmarinic acid pathway 208 7 C4H (89) View species results
Steroid pathway 111 11 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1612 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
POO00378.1[Trema Terpenoid CYP76 low borderline CYP76__00017__sp_Q14T82_C76B9_PETHY
POO01868.1[Trema Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
POO01869.1[Trema Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
POO01870.1[Trema Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
POO02655.1[Trema Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
POO03420.1[Trema Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO