Trema orientale (trema_orientale)
Imported from atlas release summary for Trema orientale.
2047
Candidate Protein Records
1868
Pathway-Level Records
4373
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4373
Family-Level Calls
C4H
6.56%
BAHD
5.85%
C3'H/CYP98A
5.69%
UGT
5.26%
7DLGT
4.73%
UFGT
4.55%
IFS
3.64%
CYP76
3.57%
Other Families
60.14%
More Families (98)
POD
141
3.22%
T3O
131
3.0%
F3H
128
2.93%
4CL
123
2.81%
DWF4/CYP90B1
100
2.29%
F3'H/CYP75B
88
2.01%
BR6OX2/CYP85A2
82
1.88%
CAD
79
1.81%
HCT
75
1.72%
H6H
73
1.67%
STR
69
1.58%
CODM/T6ODM
68
1.55%
CAS
60
1.37%
NMT
59
1.35%
CYP71
54
1.23%
SMT1/SMT2/SMT3
53
1.21%
TRI/TRII
49
1.12%
LAC
45
1.03%
CYP90D1
45
1.03%
RAS
44
1.01%
TAT
44
1.01%
GS
43
0.98%
T16H
42
0.96%
BBE
40
0.91%
G8O/G8H
39
0.89%
IFR
39
0.89%
CSE
37
0.85%
SGD
35
0.8%
PMT
34
0.78%
ANR
32
0.73%
TPS
31
0.71%
NCS
30
0.69%
7DLH
29
0.66%
COMT
29
0.66%
IO
28
0.64%
GES
28
0.64%
FNS
27
0.62%
F5H/CYP84A
26
0.59%
LAMT
25
0.57%
CCR
25
0.57%
PYKS
24
0.55%
PAL
24
0.55%
16OMT
23
0.53%
SLS
22
0.5%
DFR
19
0.43%
CPD/CYP90A1
18
0.41%
COR
16
0.37%
F3'5'H/CYP75A
15
0.34%
ANS/LDOX
15
0.34%
HPPR
14
0.32%
8HGO
13
0.3%
CNMT
12
0.27%
BR6OX1/CYP85A1
10
0.23%
AACT
10
0.23%
CYP719
9
0.21%
MPO
9
0.21%
CHS
9
0.21%
DET2
9
0.21%
FPPS
9
0.21%
TYDC_DDC
8
0.18%
CYP80B1
8
0.18%
ISY
7
0.16%
CCoAOMT
7
0.16%
CYP51G1
7
0.16%
CPR
6
0.14%
SQS/FDFT1
6
0.14%
SQE
6
0.14%
CHI
5
0.11%
ROT3/CYP90C1
5
0.11%
SMO1/SMO2
4
0.09%
GGPPS
4
0.09%
DXS
4
0.09%
CYP80F1
3
0.07%
XMT_MXMT_DXMT
3
0.07%
MVK
3
0.07%
HMGR
3
0.07%
MVD
3
0.07%
TDC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
DWF7
2
0.05%
HDS/IspG
2
0.05%
IDI
2
0.05%
HMGS
2
0.05%
MCT/IspD
2
0.05%
CMK/IspE
2
0.05%
ODC
1
0.02%
ADC
1
0.02%
FLS
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
DXR
1
0.02%
HDR/IspH
1
0.02%
PMK
1
0.02%
GPPS
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 556 | 20 | BAHD (218) | View species results |
| Alkaloid pathway | 365 | 25 | 7DLGT (96) | View species results |
| Phenylpropanoid pathway | 356 | 13 | POD (138) | View species results |
| Flavonoid pathway | 272 | 13 | UFGT (190) | View species results |
| Rosmarinic acid pathway | 208 | 7 | C4H (89) | View species results |
| Steroid pathway | 111 | 11 | CAS (57) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1612 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 375 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PON93969.1[Trema | Alkaloid | NMT | medium | borderline |
| PON94877.1[Trema | Alkaloid | NMT | medium | pass |
| PON96238.1[Trema | Alkaloid | NMT | medium | pass |
| PON96239.1[Trema | Alkaloid | NMT | medium | pass |
| PON97194.1[Trema | Alkaloid | NMT | medium | pass |
| PON97864.1[Trema | Alkaloid | NMT | medium | pass |
| PON98019.1[Trema | Alkaloid | NMT | low | borderline |
| PON98210.1[Trema | Alkaloid | NMT | medium | borderline |
| PON98553.1[Trema | Alkaloid | NMT | low | borderline |
| PON98744.1[Trema | Alkaloid | NMT | medium | pass |
| PON99308.1[Trema | Alkaloid | NMT | low | borderline |
| PON99446.1[Trema | Alkaloid | NMT | medium | pass |
| POO00632.1[Trema | Alkaloid | NMT | medium | pass |
| POO00633.1[Trema | Alkaloid | NMT | medium | pass |
| POO00932.1[Trema | Alkaloid | NMT | low | borderline |
| POO01826.1[Trema | Alkaloid | NMT | medium | borderline |
| POO02627.1[Trema | Alkaloid | NMT | medium | pass |
| POO02914.1[Trema | Alkaloid | NMT | medium | pass |
| POO03419.1[Trema | Alkaloid | NMT | medium | pass |
| POO03485.1[Trema | Alkaloid | NMT | medium | pass |
| POO03787.1[Trema | Alkaloid | NMT | medium | pass |
| POO04193.1[Trema | Alkaloid | NMT | medium | pass |
| PON93977.1[Trema | Alkaloid | ODC | medium | pass |
| PON34200.1[Trema | Alkaloid | PMT | medium | pass |
| PON34201.1[Trema | Alkaloid | PMT | medium | pass |
| PON36980.1[Trema | Alkaloid | PMT | low | borderline |
| PON42597.1[Trema | Alkaloid | PMT | medium | pass |
| PON43514.1[Trema | Alkaloid | PMT | medium | pass |
| PON43845.1[Trema | Alkaloid | PMT | medium | pass |
| PON47908.1[Trema | Alkaloid | PMT | low | borderline |
| PON48053.1[Trema | Alkaloid | PMT | low | borderline |
| PON81395.1[Trema | Alkaloid | PMT | medium | pass |
| PON82141.1[Trema | Alkaloid | PMT | low | borderline |
| PON83704.1[Trema | Alkaloid | PMT | low | borderline |
| PON84326.1[Trema | Alkaloid | PMT | low | borderline |
| PON86291.1[Trema | Alkaloid | PMT | low | borderline |
| PON86569.1[Trema | Alkaloid | PMT | low | borderline |
| PON88778.1[Trema | Alkaloid | PMT | medium | pass |
| PON88780.1[Trema | Alkaloid | PMT | medium | pass |
| PON89200.1[Trema | Alkaloid | PMT | low | borderline |
| PON89335.1[Trema | Alkaloid | PMT | low | borderline |
| PON89338.1[Trema | Alkaloid | PMT | medium | pass |
| PON89341.1[Trema | Alkaloid | PMT | low | borderline |
| PON92372.1[Trema | Alkaloid | PMT | medium | pass |
| PON92587.1[Trema | Alkaloid | PMT | low | borderline |
| PON92588.1[Trema | Alkaloid | PMT | low | borderline |
| PON93361.1[Trema | Alkaloid | PMT | medium | borderline |
| PON93397.1[Trema | Alkaloid | PMT | low | borderline |
| PON94765.1[Trema | Alkaloid | PMT | medium | pass |
| PON94766.1[Trema | Alkaloid | PMT | medium | pass |