PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
TpraFKJA01010823.10140210.1 Flavonoid 4CL low borderline
TpraFKJA01012066.10143420.1 Flavonoid 4CL medium pass
TpraFKJA01015612.10151170.1 Flavonoid 4CL medium pass
TpraFKJA01021995.10162150.1 Flavonoid 4CL medium pass
TpraFKJA01028921.10172250.1 Flavonoid 4CL medium pass
TpraFKJA01032165.10176260.1 Flavonoid 4CL medium pass
Tpra02G0013910.1 Flavonoid ANR low borderline
Tpra02G0016860.1 Flavonoid ANR low borderline
Tpra02G0032150.1 Flavonoid ANR medium borderline
Tpra03G0013850.1 Flavonoid ANR medium borderline
Tpra03G0035290.1 Flavonoid ANR medium borderline
Tpra04G0022290.1 Flavonoid ANR medium borderline
Tpra04G0027330.1 Flavonoid ANR medium borderline
Tpra04G0027340.1 Flavonoid ANR low borderline
Tpra05G0011620.1 Flavonoid ANR low borderline
Tpra07G0024710.1 Flavonoid ANR medium borderline
Tpra07G0032120.1 Flavonoid ANR medium borderline
TpraFKJA01000321.10026890.1 Flavonoid ANR medium borderline
TpraFKJA01000415.10037130.1 Flavonoid ANR medium borderline
TpraFKJA01000415.10037140.1 Flavonoid ANR medium borderline
TpraFKJA01000415.10037150.1 Flavonoid ANR medium borderline
TpraFKJA01000657.10062180.1 Flavonoid ANR low borderline
TpraFKJA01000769.10071660.1 Flavonoid ANR medium borderline
TpraFKJA01000880.10079560.1 Flavonoid ANR medium borderline
TpraFKJA01001670.10104820.1 Flavonoid ANR medium borderline
TpraFKJA01002770.10113780.1 Flavonoid ANR low borderline
TpraFKJA01012351.10144130.1 Flavonoid ANR medium borderline
TpraFKJA01015003.10150000.1 Flavonoid ANR medium borderline
TpraFKJA01016382.10152680.1 Flavonoid ANR medium pass
TpraFKJA01031039.10175040.1 Flavonoid ANR medium borderline
TpraFKJA01035279.10179880.1 Flavonoid ANR medium borderline
Tpra01G0002670.1 Flavonoid ANS/LDOX medium pass
Tpra02G0003810.1 Flavonoid ANS/LDOX medium borderline
Tpra02G0019310.1 Flavonoid ANS/LDOX medium pass
Tpra02G0026080.1 Flavonoid ANS/LDOX medium borderline
Tpra03G0009430.1 Flavonoid ANS/LDOX low borderline
Tpra03G0009450.1 Flavonoid ANS/LDOX medium pass
Tpra03G0009460.1 Flavonoid ANS/LDOX medium pass
Tpra03G0009470.1 Flavonoid ANS/LDOX medium pass
Tpra03G0009490.1 Flavonoid ANS/LDOX low borderline
Tpra03G0009500.1 Flavonoid ANS/LDOX low borderline
Tpra03G0015960.1 Flavonoid ANS/LDOX medium pass
Tpra03G0015970.1 Flavonoid ANS/LDOX low borderline
Tpra03G0015990.1 Flavonoid ANS/LDOX medium pass
Tpra03G0016010.1 Flavonoid ANS/LDOX medium borderline
Tpra03G0028800.1 Flavonoid ANS/LDOX medium borderline
Tpra03G0033800.1 Flavonoid ANS/LDOX medium borderline
Tpra04G0001740.1 Flavonoid ANS/LDOX medium borderline
Tpra04G0012650.1 Flavonoid ANS/LDOX low borderline
Tpra04G0019290.1 Flavonoid ANS/LDOX medium pass