PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Tpra07G0008230.1 Flavonoid ANS/LDOX medium borderline
Tpra07G0008420.1 Flavonoid ANS/LDOX medium borderline
Tpra07G0015200.1 Flavonoid ANS/LDOX medium borderline
Tpra07G0030420.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01000151.10004710.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01000178.10007710.1 Flavonoid ANS/LDOX low borderline
TpraFKJA01000284.10022900.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01000324.10027250.1 Flavonoid ANS/LDOX medium pass
TpraFKJA01000342.10030130.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01000448.10040580.1 Flavonoid ANS/LDOX low borderline
TpraFKJA01000448.10040590.1 Flavonoid ANS/LDOX low borderline
TpraFKJA01000618.10058940.1 Flavonoid ANS/LDOX low borderline
TpraFKJA01000670.10063420.1 Flavonoid ANS/LDOX medium pass
TpraFKJA01000681.10064220.1 Flavonoid ANS/LDOX medium pass
TpraFKJA01000681.10064240.1 Flavonoid ANS/LDOX medium pass
TpraFKJA01000681.10064260.1 Flavonoid ANS/LDOX low borderline
TpraFKJA01000711.10066680.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01000742.10069150.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01001062.10089450.1 Flavonoid ANS/LDOX medium pass
TpraFKJA01001325.10098630.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01001343.10099060.1 Flavonoid ANS/LDOX medium pass
TpraFKJA01001687.10105000.1 Flavonoid ANS/LDOX medium pass
TpraFKJA01005260.10124190.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01008511.10134220.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01009598.10137060.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01011952.10143110.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01016759.10153390.1 Flavonoid ANS/LDOX medium borderline
TpraFKJA01017664.10155100.1 Flavonoid ANS/LDOX medium pass
TpraFKJA01020922.10160560.1 Flavonoid ANS/LDOX medium borderline
Tpra03G0013000.1 Flavonoid C4H low borderline
Tpra04G0030720.1 Flavonoid C4H medium borderline
Tpra06G0008820.1 Flavonoid C4H medium pass
Tpra07G0008100.1 Flavonoid C4H low borderline
Tpra07G0016580.1 Flavonoid C4H medium borderline
TpraFKJA01000367.10032140.1 Flavonoid C4H medium borderline
TpraFKJA01000943.10083110.1 Flavonoid C4H low borderline
TpraFKJA01001248.10096390.1 Flavonoid C4H low borderline
TpraFKJA01005166.10123820.1 Flavonoid C4H low borderline
TpraFKJA01009463.10136710.1 Flavonoid C4H medium borderline
TpraFKJA01011997.10143220.1 Flavonoid C4H medium pass
TpraFKJA01015286.10150510.1 Flavonoid C4H low borderline
TpraFKJA01028948.10172290.1 Flavonoid C4H medium pass
TpraFKJA01033925.10178240.1 Flavonoid C4H medium borderline
TpraFKJA01035245.10179820.1 Flavonoid C4H low borderline
Tpra01G0005730.1 Flavonoid CHI medium pass
Tpra01G0005740.1 Flavonoid CHI medium pass
Tpra01G0019850.1 Flavonoid CHI medium pass
Tpra03G0025580.1 Flavonoid CHI medium pass
Tpra06G0017860.1 Flavonoid CHI medium pass
Tpra06G0017870.1 Flavonoid CHI medium pass