PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Family-Level Assignments
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Tpra03G0012970.1 Steroid CYP90D1 low borderline
Tpra03G0017650.1 Steroid CYP90D1 low borderline
Tpra03G0030170.1 Steroid CYP90D1 low borderline
Tpra04G0000640.1 Steroid CYP90D1 low borderline
Tpra04G0000710.1 Steroid CYP90D1 medium borderline
Tpra04G0007230.1 Steroid CYP90D1 low borderline
Tpra04G0012430.1 Steroid CYP90D1 low borderline
Tpra05G0001140.1 Steroid CYP90D1 medium borderline
Tpra05G0012010.1 Steroid CYP90D1 medium borderline
Tpra06G0009170.1 Steroid CYP90D1 low borderline
Tpra06G0009280.1 Steroid CYP90D1 low borderline
Tpra07G0008100.1 Steroid CYP90D1 low borderline
Tpra07G0010330.1 Steroid CYP90D1 low borderline
Tpra07G0019880.1 Steroid CYP90D1 low borderline
Tpra07G0031390.1 Steroid CYP90D1 low borderline
Tpra07G0034300.1 Steroid CYP90D1 low borderline
Tpra07G0034490.1 Steroid CYP90D1 low borderline
TpraFKJA01000242.10018290.1 Steroid CYP90D1 medium borderline
TpraFKJA01000292.10023980.1 Steroid CYP90D1 medium borderline
TpraFKJA01000333.10028630.1 Steroid CYP90D1 low borderline
TpraFKJA01000426.10038230.1 Steroid CYP90D1 low borderline
TpraFKJA01000686.10064820.1 Steroid CYP90D1 low borderline
TpraFKJA01000820.10075440.1 Steroid CYP90D1 medium borderline
TpraFKJA01000836.10076410.1 Steroid CYP90D1 low borderline
TpraFKJA01000890.10080210.1 Steroid CYP90D1 low borderline
TpraFKJA01001176.10094080.1 Steroid CYP90D1 medium borderline
TpraFKJA01001559.10103450.1 Steroid CYP90D1 low borderline
TpraFKJA01003781.10118600.1 Steroid CYP90D1 medium borderline
TpraFKJA01004178.10120250.1 Steroid CYP90D1 low borderline
TpraFKJA01014477.10148900.1 Steroid CYP90D1 low borderline
TpraFKJA01028493.10171750.1 Steroid CYP90D1 medium borderline
Tpra04G0007360.1 Steroid DET2 low borderline
Tpra04G0007380.1 Steroid DET2 low borderline
Tpra04G0025040.1 Steroid DET2 medium borderline
Tpra04G0025040.2 Steroid DET2 medium borderline
Tpra05G0011810.1 Steroid DET2 low borderline
TpraFKJA01000563.10053160.1 Steroid DET2 low borderline
TpraFKJA01001001.10086210.1 Steroid DET2 low borderline
TpraFKJA01009121.10135770.1 Steroid DET2 medium pass
Tpra01G0010580.1 Steroid DWF1 medium pass
Tpra04G0031620.1 Steroid DWF1 low borderline
TpraFKJA01002071.10108920.1 Steroid DWF1 low borderline
Tpra01G0010430.1 Steroid DWF4/CYP90B1 low borderline
Tpra01G0013400.1 Steroid DWF4/CYP90B1 low borderline
Tpra01G0013880.1 Steroid DWF4/CYP90B1 low borderline
Tpra01G0015940.1 Steroid DWF4/CYP90B1 low borderline
Tpra01G0015950.1 Steroid DWF4/CYP90B1 low borderline
Tpra01G0016830.1 Steroid DWF4/CYP90B1 low borderline
Tpra01G0018340.1 Steroid DWF4/CYP90B1 low borderline
Tpra01G0018380.1 Steroid DWF4/CYP90B1 low borderline