PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
TRsanscaffold_20095400 Flavonoid IFR high pass
TRsanscaffold_20095410 Flavonoid IFR high pass
TRsanscaffold_20102690 Flavonoid IFR low borderline
TRsanscaffold_30105010 Flavonoid IFR low borderline
TRsanscaffold_40133750 Flavonoid IFR high pass
TRsanscaffold_50148700 Flavonoid IFR high pass
TRsanscaffold_50151230 Flavonoid IFR high pass
TRsanscaffold_50151240 Flavonoid IFR high pass
TRsanscaffold_50151480 Flavonoid IFR low borderline
TRsanscaffold_50153240 Flavonoid IFR medium borderline
TRsanscaffold_50155320 Flavonoid IFR low borderline
TRsanscaffold_50158540 Flavonoid IFR low borderline
TRsanscaffold_60166220 Flavonoid IFR high pass
TRsanscaffold_60167000 Flavonoid IFR low borderline
TRsanscaffold_60186220 Flavonoid IFR low borderline
TRsanscaffold_70189650 Flavonoid IFR medium pass
TRsanscaffold_70191010 Flavonoid IFR high pass
TRsanscaffold_70195140 Flavonoid IFR low borderline
TRsanscaffold_80199740 Flavonoid IFR high pass
TRsanscaffold_80209330 Flavonoid IFR low borderline
TRsanscaffold_80212020 Flavonoid IFR low borderline
TRsanscaffold_90216940 Flavonoid IFR low borderline
TRsanscaffold_90220480 Flavonoid IFR low borderline
TRsanscaffold_90220490 Flavonoid IFR low borderline
TRsanscaffold_90221650 Flavonoid IFR low borderline
TRsanscaffold_100014220 Flavonoid IFS medium borderline
TRsanscaffold_100014260 Flavonoid IFS medium borderline
TRsanscaffold_100014270 Flavonoid IFS medium borderline
TRsanscaffold_100014290 Flavonoid IFS medium borderline
TRsanscaffold_100014460 Flavonoid IFS medium borderline
TRsanscaffold_100016110 Flavonoid IFS low borderline
TRsanscaffold_100016120 Flavonoid IFS low borderline
TRsanscaffold_100033810 Flavonoid IFS medium borderline
TRsanscaffold_100036580 Flavonoid IFS medium borderline
TRsanscaffold_10003770 Flavonoid IFS low borderline
TRsanscaffold_100038090 Flavonoid IFS medium borderline
TRsanscaffold_10010000 Flavonoid IFS low borderline
TRsanscaffold_10010040 Flavonoid IFS low borderline
TRsanscaffold_110042130 Flavonoid IFS medium borderline
TRsanscaffold_110042140 Flavonoid IFS medium borderline
TRsanscaffold_110044680 Flavonoid IFS low borderline
TRsanscaffold_110044710 Flavonoid IFS low borderline
TRsanscaffold_110044720 Flavonoid IFS low borderline
TRsanscaffold_120050520 Flavonoid IFS medium borderline
TRsanscaffold_120050650 Flavonoid IFS medium borderline
TRsanscaffold_120050820 Flavonoid IFS medium borderline
TRsanscaffold_120051110 Flavonoid IFS medium borderline
TRsanscaffold_130055210 Flavonoid IFS medium borderline
TRsanscaffold_170060910 Flavonoid IFS low borderline
TRsanscaffold_20064030 Flavonoid IFS medium borderline