PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
TRsanscaffold_20064360 Flavonoid IFS medium borderline
TRsanscaffold_20065760 Flavonoid IFS medium borderline
TRsanscaffold_20065890 Flavonoid IFS medium borderline
TRsanscaffold_20067470 Flavonoid IFS medium borderline
TRsanscaffold_20067480 Flavonoid IFS low borderline
TRsanscaffold_20072640 Flavonoid IFS low borderline
TRsanscaffold_20072700 Flavonoid IFS low borderline
TRsanscaffold_20082400 Flavonoid IFS low borderline
TRsanscaffold_20092000 Flavonoid IFS medium borderline
TRsanscaffold_20092810 Flavonoid IFS medium borderline
TRsanscaffold_20095700 Flavonoid IFS medium borderline
TRsanscaffold_20097770 Flavonoid IFS medium borderline
TRsanscaffold_20099470 Flavonoid IFS low borderline
TRsanscaffold_20100550 Flavonoid IFS medium borderline
TRsanscaffold_30110900 Flavonoid IFS medium borderline
TRsanscaffold_30115580 Flavonoid IFS medium borderline
TRsanscaffold_40121350 Flavonoid IFS medium borderline
TRsanscaffold_40132850 Flavonoid IFS low borderline
TRsanscaffold_40136570 Flavonoid IFS medium borderline
TRsanscaffold_40139670 Flavonoid IFS low borderline
TRsanscaffold_40142500 Flavonoid IFS low borderline
TRsanscaffold_40145690 Flavonoid IFS low borderline
TRsanscaffold_50154930 Flavonoid IFS low borderline
TRsanscaffold_50156060 Flavonoid IFS low borderline
TRsanscaffold_50159500 Flavonoid IFS medium borderline
TRsanscaffold_50159700 Flavonoid IFS medium borderline
TRsanscaffold_60169620 Flavonoid IFS low borderline
TRsanscaffold_60178580 Flavonoid IFS low borderline
TRsanscaffold_60181040 Flavonoid IFS medium borderline
TRsanscaffold_60181080 Flavonoid IFS medium borderline
TRsanscaffold_60181100 Flavonoid IFS medium borderline
TRsanscaffold_60181110 Flavonoid IFS medium borderline
TRsanscaffold_60183390 Flavonoid IFS medium borderline
TRsanscaffold_60184280 Flavonoid IFS medium borderline
TRsanscaffold_60185130 Flavonoid IFS medium borderline
TRsanscaffold_60185180 Flavonoid IFS medium borderline
TRsanscaffold_80206890 Flavonoid IFS medium borderline
TRsanscaffold_80208440 Flavonoid IFS low borderline
TRsanscaffold_80208880 Flavonoid IFS low borderline
TRsanscaffold_90215480 Flavonoid IFS medium borderline
TRsanscaffold_90216840 Flavonoid IFS medium borderline
TRsanscaffold_90216860 Flavonoid IFS medium borderline
TRsanscaffold_110046900 Flavonoid PAL high pass
TRsanscaffold_20099380 Flavonoid PAL high pass
TRsanscaffold_40127000 Flavonoid PAL high pass
TRsanscaffold_40127020 Flavonoid PAL high pass
TRsanscaffold_40127030 Flavonoid PAL high pass
TRsanscaffold_50158760 Flavonoid PAL high pass
TRsanscaffold_90221230 Flavonoid PAL low borderline
TRsanscaffold_20065210 Flavonoid UFGT low borderline