PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
alnus_rubra_ALNRU00035639-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00035644-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00038062-RA Rosmarinic Acid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
alnus_rubra_ALNRU00038833-RA Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
alnus_rubra_ALNRU00045876-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
alnus_rubra_ALNRU00045967-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00052249-RA Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
alnus_rubra_ALNRU00054207-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00055740-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00060273-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00061908-RA Rosmarinic Acid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
alnus_rubra_ALNRU00063923-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00076010-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00076011-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00080598-RA Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
alnus_rubra_ALNRU00081345-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
alnus_rubra_ALNRU00083415-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00087439-RA Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
alnus_rubra_ALNRU00090869-RA Rosmarinic Acid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
alnus_rubra_ALNRU00095706-RA Rosmarinic Acid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
alnus_rubra_ALNRU00109878-RA Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
alnus_rubra_ALNRU00113194-RA Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
alnus_rubra_ALNRU00113987-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
alnus_rubra_ALNRU00115576-RA Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
alnus_rubra_ALNRU00115581-RA Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
alnus_rubra_ALNRU00115806-RA Rosmarinic Acid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
alnus_rubra_ALNRU00130727-RA Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
alnus_rubra_ALNRU00131147-RA Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
alnus_rubra_ALNRU00138326-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH