PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
alnus_rubra_ALNRU00000326-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00002765-RA Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
alnus_rubra_ALNRU00005245-RA Phenylpropanoid CAD medium pass CAD__00008__sp_O49482_CADH5_ARATH
alnus_rubra_ALNRU00007806-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00007837-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00007900-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00007907-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00009378-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00009380-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00009382-RA Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00011316-RA Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
alnus_rubra_ALNRU00012563-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00012575-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00012650-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00013537-RA Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
alnus_rubra_ALNRU00013608-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00016654-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00016655-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00017528-RA Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
alnus_rubra_ALNRU00021907-RA Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
alnus_rubra_ALNRU00027048-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00027081-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00032915-RA Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
alnus_rubra_ALNRU00035474-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00036985-RA Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
alnus_rubra_ALNRU00048433-RA Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
alnus_rubra_ALNRU00060312-RA Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00061363-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00061417-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00061461-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00062009-RA Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00065491-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00065496-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00065501-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00065507-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00065510-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00070334-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00072835-RA Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
alnus_rubra_ALNRU00085639-RA Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
alnus_rubra_ALNRU00085651-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00085652-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00085653-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00085657-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
alnus_rubra_ALNRU00086532-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00093415-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00093417-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00093419-RA Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00093424-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00093435-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
alnus_rubra_ALNRU00093447-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM