PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00011572-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00030279-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00030284-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00030345-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00030346-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00030351-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00030729-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00030737-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033235-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033248-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00033250-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033297-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033312-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033330-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033354-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033375-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033385-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033388-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033392-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033399-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033405-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033411-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00033415-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00040838-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00040840-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00040850-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00040851-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00040855-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00040861-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00040862-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00041334-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00041336-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00041343-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00042415-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00042418-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00042991-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00043262-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00043267-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00050019-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00051115-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00060141-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00062794-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00072343-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00076889-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00076890-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00090498-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00090511-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00090515-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00090520-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00091153-RA Phenylpropanoid LAC low borderline