PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
alnus_rubra_ALNRU00000203-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00000227-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00005148-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00011340-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00012158-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
alnus_rubra_ALNRU00025496-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
alnus_rubra_ALNRU00026222-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00031468-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00035118-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00041431-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00047787-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00047806-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00062542-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
alnus_rubra_ALNRU00067415-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00067422-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00067428-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00068536-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00071254-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
alnus_rubra_ALNRU00085160-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00085169-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00093814-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00105137-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00107131-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00110043-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
alnus_rubra_ALNRU00112876-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00113933-RA Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00116777-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00125195-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00126630-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
alnus_rubra_ALNRU00127947-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00130889-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00131213-RA Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
alnus_rubra_ALNRU00138080-RA Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH