PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
alnus_rubra_ALNRU00026094-RA Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026103-RA Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
alnus_rubra_ALNRU00026104-RA Flavonoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026110-RA Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026113-RA Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026120-RA Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00062587-RA Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00062591-RA Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00103226-RA Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
alnus_rubra_ALNRU00113829-RA Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00127182-RA Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026094-RA Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026103-RA Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
alnus_rubra_ALNRU00026104-RA Phenylpropanoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026110-RA Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026113-RA Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026120-RA Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00062587-RA Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00062591-RA Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00103226-RA Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
alnus_rubra_ALNRU00113829-RA Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00127182-RA Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026094-RA Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026103-RA Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
alnus_rubra_ALNRU00026104-RA Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026110-RA Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026113-RA Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00026120-RA Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
alnus_rubra_ALNRU00062587-RA Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00062591-RA Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00103226-RA Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
alnus_rubra_ALNRU00113829-RA Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
alnus_rubra_ALNRU00127182-RA Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH