PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00000269-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00000484-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00002835-RA Alkaloid PMT medium borderline
alnus_rubra_ALNRU00019709-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00038090-RA Alkaloid PMT medium pass
alnus_rubra_ALNRU00039033-RA Alkaloid PMT medium pass
alnus_rubra_ALNRU00041769-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00042167-RA Alkaloid PMT medium borderline
alnus_rubra_ALNRU00043193-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00043622-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00043627-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00045925-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00045926-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00052357-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00069972-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00070002-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00070014-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00074219-RA Alkaloid PMT medium borderline
alnus_rubra_ALNRU00080445-RA Alkaloid PMT medium pass
alnus_rubra_ALNRU00080790-RA Alkaloid PMT medium pass
alnus_rubra_ALNRU00081821-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00081832-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00081834-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00106575-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00116274-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00121195-RA Alkaloid PMT medium pass
alnus_rubra_ALNRU00122420-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00130232-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00130237-RA Alkaloid PMT low borderline
alnus_rubra_ALNRU00134376-RA Alkaloid PMT medium borderline
alnus_rubra_ALNRU00136530-RA Alkaloid PMT medium pass
alnus_rubra_ALNRU00139234-RA Alkaloid PMT medium pass