PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
alnus_rubra_ALNRU00007825-RA Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
alnus_rubra_ALNRU00007837-RA Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
alnus_rubra_ALNRU00007900-RA Terpenoid TPS medium pass TPS__00086__sp_E2E2N8_GCDS_ORIVU
alnus_rubra_ALNRU00007907-RA Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
alnus_rubra_ALNRU00012106-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00012113-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00012120-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00012129-RA Terpenoid TPS medium pass TPS__00134__sp_J9R388_TPS10_SELML
alnus_rubra_ALNRU00012149-RA Terpenoid TPS medium pass TPS__00134__sp_J9R388_TPS10_SELML
alnus_rubra_ALNRU00012151-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00012563-RA Terpenoid TPS medium pass TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA
alnus_rubra_ALNRU00012572-RA Terpenoid TPS medium pass TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA
alnus_rubra_ALNRU00012575-RA Terpenoid TPS medium pass TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA
alnus_rubra_ALNRU00027048-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00027069-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00027081-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00039598-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00086532-RA Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
alnus_rubra_ALNRU00093415-RA Terpenoid TPS low borderline TPS__00111__sp_G0Y7D2_TPS2_LITCU
alnus_rubra_ALNRU00093417-RA Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
alnus_rubra_ALNRU00093419-RA Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
alnus_rubra_ALNRU00093424-RA Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
alnus_rubra_ALNRU00093435-RA Terpenoid TPS medium pass TPS__00111__sp_G0Y7D2_TPS2_LITCU
alnus_rubra_ALNRU00093447-RA Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
alnus_rubra_ALNRU00093451-RA Terpenoid TPS medium pass TPS__00111__sp_G0Y7D2_TPS2_LITCU
alnus_rubra_ALNRU00103076-RA Terpenoid TPS medium pass TPS__00009__sp_A0A1C7AAN2_TPS10_TRIWF
alnus_rubra_ALNRU00103099-RA Terpenoid TPS medium pass TPS__00009__sp_A0A1C7AAN2_TPS10_TRIWF
alnus_rubra_ALNRU00104413-RA Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
alnus_rubra_ALNRU00104424-RA Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
alnus_rubra_ALNRU00104425-RA Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
alnus_rubra_ALNRU00111970-RA Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
alnus_rubra_ALNRU00111987-RA Terpenoid TPS low borderline TPS__00110__sp_G0Y7D1_TPS1_LITCU
alnus_rubra_ALNRU00112005-RA Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
alnus_rubra_ALNRU00112017-RA Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
alnus_rubra_ALNRU00112026-RA Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
alnus_rubra_ALNRU00112029-RA Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
alnus_rubra_ALNRU00112034-RA Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
alnus_rubra_ALNRU00112060-RA Terpenoid TPS medium pass TPS__00111__sp_G0Y7D2_TPS2_LITCU
alnus_rubra_ALNRU00115729-RA Terpenoid TPS medium pass TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA
alnus_rubra_ALNRU00125563-RA Terpenoid TPS medium pass TPS__00111__sp_G0Y7D2_TPS2_LITCU
alnus_rubra_ALNRU00125577-RA Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
alnus_rubra_ALNRU00125801-RA Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
alnus_rubra_ALNRU00126624-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00131799-RA Terpenoid TPS medium pass TPS__00050__sp_A0A7G5KLV0_TPS1_CANOD
alnus_rubra_ALNRU00131807-RA Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
alnus_rubra_ALNRU00134064-RA Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
alnus_rubra_ALNRU00138061-RA Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
alnus_rubra_ALNRU00139679-RA Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
alnus_rubra_ALNRU00140457-RA Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
alnus_rubra_ALNRU00141030-RA Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO