PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.73% Phenylpropanoid pathway 20.35% Alkaloid pathway 20.14% Flavonoid pathway 13.82% Rosmarinic acid pathway 8.82% Steroid pathway 7.14%
Family Distribution
C3'H/CYP98A 5.84% C4H 5.81% UGT 5.61% BAHD 5.31% 7DLGT 4.85% UFGT 4.65% POD 4.12% CYP76 4.12%
Other Families 59.69%
More Families (96)
IFS 171 3.91% T3O 142 3.25% 4CL 129 2.95% DWF4/CYP90B1 108 2.47% CAS 91 2.08% F3H 90 2.06% F3'H/CYP75B 83 1.9% CAD 78 1.79% LAC 77 1.76% BR6OX2/CYP85A2 75 1.72% NMT 73 1.67% SMT1/SMT2/SMT3 69 1.58% STR 63 1.44% TRI/TRII 62 1.42% CODM/T6ODM 58 1.33% GES 50 1.14% TPS 50 1.14% H6H 46 1.05% TAT 46 1.05% T16H 42 0.96% G8O/G8H 40 0.92% GS 39 0.89% HCT 39 0.89% CYP71 39 0.89% COMT 36 0.82% IO 33 0.76% PAL 33 0.76% CSE 33 0.76% CYP90D1 33 0.76% PMT 32 0.73% IFR 32 0.73% RAS 30 0.69% SLS 27 0.62% 16OMT 27 0.62% SGD 25 0.57% FNS 25 0.57% BR6OX1/CYP85A1 25 0.57% PYKS 24 0.55% ANR 23 0.53% F3'5'H/CYP75A 23 0.53% CPD/CYP90A1 22 0.5% COR 21 0.48% BBE 20 0.46% F5H/CYP84A 19 0.43% 7DLH 17 0.39% CYP51G1 15 0.34% CYP80B1 14 0.32% NCS 14 0.32% CCR 14 0.32% LAMT 13 0.3% 8HGO 13 0.3% DFR 13 0.3% CNMT 11 0.25% CPR 11 0.25% MPO 10 0.23% CCoAOMT 8 0.18% MVD 8 0.18% ISY 7 0.16% ANS/LDOX 7 0.16% DXS 7 0.16% AACT 7 0.16% HMGR 7 0.16% TYDC_DDC 6 0.14% CHI 6 0.14% FLS 6 0.14% SQE 6 0.14% GGPPS 6 0.14% MVK 6 0.14% SQS/FDFT1 5 0.11% MCT/IspD 5 0.11% CMK/IspE 5 0.11% FPPS 5 0.11% CHS 4 0.09% HPPR 4 0.09% DXR 4 0.09% TDC 3 0.07% ODC 3 0.07% DWF7 3 0.07% CYP80F1 2 0.05% CYP719 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% DWF1 2 0.05% SMO1/SMO2 2 0.05% CPI1 2 0.05% ROT3/CYP90C1 2 0.05% DET2 2 0.05% DWF5 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% MDS/IspF 2 0.05% PMK 2 0.05% HYD1 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00003456-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00003533-RA Steroid CPD/CYP90A1 medium borderline
alnus_rubra_ALNRU00009485-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00013215-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00019879-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00033706-RA Steroid CPD/CYP90A1 medium borderline
alnus_rubra_ALNRU00064682-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00066169-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00073305-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00080511-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00080517-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00091679-RA Steroid CPD/CYP90A1 medium borderline
alnus_rubra_ALNRU00094180-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00094187-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00094205-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00094207-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00094212-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00124558-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00125252-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00129804-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00132386-RA Steroid CPD/CYP90A1 low borderline
alnus_rubra_ALNRU00140976-RA Steroid CPD/CYP90A1 low borderline