PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00002016-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00004688-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00004693-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00009602-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00010588-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00010886-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00013073-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00013087-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00017098-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00026268-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00026608-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00028961-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00034209-RA Alkaloid T16H low borderline
alnus_rubra_ALNRU00034214-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00034415-RA Alkaloid T16H low borderline
alnus_rubra_ALNRU00035832-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00047973-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00048004-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00065781-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00080517-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00090402-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00092500-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00093828-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00093829-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00094180-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00094207-RA Alkaloid T16H medium pass
alnus_rubra_ALNRU00096972-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00103016-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00106697-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00106705-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00106713-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00111590-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00122270-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00125259-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00132172-RA Alkaloid T16H low borderline
alnus_rubra_ALNRU00132179-RA Alkaloid T16H low borderline
alnus_rubra_ALNRU00132185-RA Alkaloid T16H low borderline
alnus_rubra_ALNRU00135805-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00136612-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00136847-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00138160-RA Alkaloid T16H medium borderline
alnus_rubra_ALNRU00140195-RA Alkaloid T16H medium borderline