PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00000859-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00002016-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00002612-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00004688-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00004693-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00008145-RA Flavonoid FNS low borderline
alnus_rubra_ALNRU00010886-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00017144-RA Flavonoid FNS low borderline
alnus_rubra_ALNRU00026038-RA Flavonoid FNS low borderline
alnus_rubra_ALNRU00026608-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00027974-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00027975-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00035809-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00041736-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00041738-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00044506-RA Flavonoid FNS low borderline
alnus_rubra_ALNRU00049955-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00059520-RA Flavonoid FNS low borderline
alnus_rubra_ALNRU00064325-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00064682-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00079768-RA Flavonoid FNS low borderline
alnus_rubra_ALNRU00089156-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00093829-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00132188-RA Flavonoid FNS medium borderline
alnus_rubra_ALNRU00132780-RA Flavonoid FNS low borderline