PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00002259-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00004682-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00006441-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00007451-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00010894-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00010895-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00021697-RA Alkaloid IO low borderline
alnus_rubra_ALNRU00041679-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00041684-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00041693-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00052668-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00052679-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00072252-RA Alkaloid IO low borderline
alnus_rubra_ALNRU00073171-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00080511-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00085525-RA Alkaloid IO low borderline
alnus_rubra_ALNRU00094225-RA Alkaloid IO low borderline
alnus_rubra_ALNRU00096955-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00096957-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00104970-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00106690-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00110280-RA Alkaloid IO low borderline
alnus_rubra_ALNRU00120652-RA Alkaloid IO low borderline
alnus_rubra_ALNRU00121386-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00121398-RA Alkaloid IO medium pass
alnus_rubra_ALNRU00121404-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00121418-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00125252-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00132188-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00134681-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00135792-RA Alkaloid IO low borderline
alnus_rubra_ALNRU00136845-RA Alkaloid IO medium borderline
alnus_rubra_ALNRU00140976-RA Alkaloid IO medium borderline