PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

/

Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
Reset
Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00001045-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00001046-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00002765-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00005245-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00008620-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00011316-RA Alkaloid GS high pass
alnus_rubra_ALNRU00012221-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00012228-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00012230-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00013608-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00016654-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00016655-RA Alkaloid GS high pass
alnus_rubra_ALNRU00021907-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00025387-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00031062-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00034414-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00036985-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00043417-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00048433-RA Alkaloid GS high pass
alnus_rubra_ALNRU00061363-RA Alkaloid GS high pass
alnus_rubra_ALNRU00061417-RA Alkaloid GS high pass
alnus_rubra_ALNRU00061461-RA Alkaloid GS high pass
alnus_rubra_ALNRU00070231-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00079693-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00084507-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00085639-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00085651-RA Alkaloid GS high pass
alnus_rubra_ALNRU00085652-RA Alkaloid GS high pass
alnus_rubra_ALNRU00085653-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00085657-RA Alkaloid GS high pass
alnus_rubra_ALNRU00096921-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00096932-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00096934-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00097037-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00113877-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00118518-RA Alkaloid GS medium pass
alnus_rubra_ALNRU00122901-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00137873-RA Alkaloid GS low borderline
alnus_rubra_ALNRU00139734-RA Alkaloid GS low borderline