PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00091159-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00092036-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00100815-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00100819-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00100898-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00100909-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00104443-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00104444-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00107229-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00107239-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00114967-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00114968-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00117199-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00118720-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00118722-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00122223-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00129240-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00130353-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00130361-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00131923-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00131929-RA Phenylpropanoid LAC medium pass
alnus_rubra_ALNRU00133430-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00133552-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00138492-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00142224-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00142843-RA Phenylpropanoid LAC low borderline
alnus_rubra_ALNRU00142844-RA Phenylpropanoid LAC low borderline