Alnus rubra (alnus_rubra)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 29.73% Phenylpropanoid pathway 20.35% Alkaloid pathway 20.14% Flavonoid pathway 13.82% Rosmarinic acid pathway 8.82% Steroid pathway 7.14%

Family Distribution

1961 Candidate Genes

C3'H/CYP98A 5.84% C4H 5.81% UGT 5.61% BAHD 5.31% 7DLGT 4.85% UFGT 4.65% POD 4.12% CYP76 4.12%

Other Families 59.69%

More Families (96)

IFS 171 3.91% T3O 142 3.25% 4CL 129 2.95% DWF4/CYP90B1 108 2.47% CAS 91 2.08% F3H 90 2.06% F3'H/CYP75B 83 1.9% CAD 78 1.79% LAC 77 1.76% BR6OX2/CYP85A2 75 1.72% NMT 73 1.67% SMT1/SMT2/SMT3 69 1.58% STR 63 1.44% TRI/TRII 62 1.42% CODM/T6ODM 58 1.33% GES 50 1.14% TPS 50 1.14% H6H 46 1.05% TAT 46 1.05% T16H 42 0.96% G8O/G8H 40 0.92% GS 39 0.89% HCT 39 0.89% CYP71 39 0.89% COMT 36 0.82% IO 33 0.76% PAL 33 0.76% CSE 33 0.76% CYP90D1 33 0.76% PMT 32 0.73% IFR 32 0.73% RAS 30 0.69% SLS 27 0.62% 16OMT 27 0.62% SGD 25 0.57% FNS 25 0.57% BR6OX1/CYP85A1 25 0.57% PYKS 24 0.55% ANR 23 0.53% F3'5'H/CYP75A 23 0.53% CPD/CYP90A1 22 0.5% COR 21 0.48% BBE 20 0.46% F5H/CYP84A 19 0.43% 7DLH 17 0.39% CYP51G1 15 0.34% CYP80B1 14 0.32% NCS 14 0.32% CCR 14 0.32% LAMT 13 0.3% 8HGO 13 0.3% DFR 13 0.3% CNMT 11 0.25% CPR 11 0.25% MPO 10 0.23% CCoAOMT 8 0.18% MVD 8 0.18% ISY 7 0.16% ANS/LDOX 7 0.16% DXS 7 0.16% AACT 7 0.16% HMGR 7 0.16% TYDC_DDC 6 0.14% CHI 6 0.14% FLS 6 0.14% SQE 6 0.14% GGPPS 6 0.14% MVK 6 0.14% SQS/FDFT1 5 0.11% MCT/IspD 5 0.11% CMK/IspE 5 0.11% FPPS 5 0.11% CHS 4 0.09% HPPR 4 0.09% DXR 4 0.09% TDC 3 0.07% ODC 3 0.07% DWF7 3 0.07% CYP80F1 2 0.05% CYP719 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% DWF1 2 0.05% SMO1/SMO2 2 0.05% CPI1 2 0.05% ROT3/CYP90C1 2 0.05% DET2 2 0.05% DWF5 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% MDS/IspF 2 0.05% PMK 2 0.05% HYD1 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	583	21	UGT (227)	View species results
Phenylpropanoid pathway	399	13	POD (167)	View species results
Alkaloid pathway	395	21	7DLGT (114)	View species results
Flavonoid pathway	271	11	UFGT (192)	View species results
Rosmarinic acid pathway	173	7	C4H (68)	View species results
Steroid pathway	140	14	CAS (84)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1623	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	301	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
alnus_rubra_ALNRU00000306-RA	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
alnus_rubra_ALNRU00000307-RA	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
alnus_rubra_ALNRU00002025-RA	Alkaloid	NMT	low	borderline	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
alnus_rubra_ALNRU00002038-RA	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
alnus_rubra_ALNRU00004114-RA	Alkaloid	NMT	medium	pass	NMT__00069__sp_Q9ZSM8_EZA1_ARATH
alnus_rubra_ALNRU00010691-RA	Alkaloid	NMT	medium	pass	NMT__00030__sp_Q43088_RBCMT_PEA
alnus_rubra_ALNRU00010826-RA	Alkaloid	NMT	medium	pass	NMT__00021__sp_O64827_SUVR5_ARATH
alnus_rubra_ALNRU00017577-RA	Alkaloid	NMT	medium	pass	NMT__00055__sp_Q9FNC7_SUVR2_ARATH
alnus_rubra_ALNRU00018857-RA	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
alnus_rubra_ALNRU00021100-RA	Alkaloid	NMT	medium	pass	NMT__00024__sp_P0CB22_ATX2_ARATH
alnus_rubra_ALNRU00021151-RA	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
alnus_rubra_ALNRU00025909-RA	Alkaloid	NMT	medium	pass	NMT__00066__sp_Q9SU94_ANM11_ARATH
alnus_rubra_ALNRU00027851-RA	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
alnus_rubra_ALNRU00028204-RA	Alkaloid	NMT	medium	pass	NMT__00057__sp_Q9FR44_PEAM1_ARATH
alnus_rubra_ALNRU00028207-RA	Alkaloid	NMT	medium	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
alnus_rubra_ALNRU00029028-RA	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
alnus_rubra_ALNRU00029153-RA	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
alnus_rubra_ALNRU00029209-RA	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
alnus_rubra_ALNRU00030395-RA	Alkaloid	NMT	medium	borderline	NMT__00029__sp_Q42963_PMT1_TOBAC
alnus_rubra_ALNRU00033127-RA	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
alnus_rubra_ALNRU00033696-RA	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
alnus_rubra_ALNRU00035364-RA	Alkaloid	NMT	low	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
alnus_rubra_ALNRU00037323-RA	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
alnus_rubra_ALNRU00038757-RA	Alkaloid	NMT	medium	pass	NMT__00069__sp_Q9ZSM8_EZA1_ARATH
alnus_rubra_ALNRU00039213-RA	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
alnus_rubra_ALNRU00040969-RA	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
alnus_rubra_ALNRU00040972-RA	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
alnus_rubra_ALNRU00041657-RA	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
alnus_rubra_ALNRU00041669-RA	Alkaloid	NMT	medium	borderline	NMT__00001__sp_A0A075D654_ANMT_RAUSE
alnus_rubra_ALNRU00041887-RA	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
alnus_rubra_ALNRU00041981-RA	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
alnus_rubra_ALNRU00042031-RA	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
alnus_rubra_ALNRU00045237-RA	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
alnus_rubra_ALNRU00045783-RA	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
alnus_rubra_ALNRU00046199-RA	Alkaloid	NMT	medium	pass	NMT__00017__sp_F4K1J4_ATXR7_ARATH
alnus_rubra_ALNRU00046921-RA	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
alnus_rubra_ALNRU00048544-RA	Alkaloid	NMT	medium	pass	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
alnus_rubra_ALNRU00057997-RA	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
alnus_rubra_ALNRU00058000-RA	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
alnus_rubra_ALNRU00060207-RA	Alkaloid	NMT	medium	pass	NMT__00024__sp_P0CB22_ATX2_ARATH
alnus_rubra_ALNRU00060370-RA	Alkaloid	NMT	low	borderline	NMT__00065__sp_Q9SEH7_PMT2_TOBAC
alnus_rubra_ALNRU00061022-RA	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
alnus_rubra_ALNRU00061737-RA	Alkaloid	NMT	medium	pass	NMT__00035__sp_Q6K431_TRX1_ORYSJ
alnus_rubra_ALNRU00064604-RA	Alkaloid	NMT	medium	pass	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
alnus_rubra_ALNRU00065523-RA	Alkaloid	NMT	low	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
alnus_rubra_ALNRU00067439-RA	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
alnus_rubra_ALNRU00069924-RA	Alkaloid	NMT	medium	pass	NMT__00061__sp_Q9SAH5_PLMT_ARATH
alnus_rubra_ALNRU00073306-RA	Alkaloid	NMT	medium	borderline	NMT__00018__sp_I1M2U5_NAMT1_SOYBN
alnus_rubra_ALNRU00075185-RA	Alkaloid	NMT	low	borderline	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
alnus_rubra_ALNRU00077778-RA	Alkaloid	NMT	low	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH