Alnus rubra (alnus_rubra)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 29.73% Phenylpropanoid pathway 20.35% Alkaloid pathway 20.14% Flavonoid pathway 13.82% Rosmarinic acid pathway 8.82% Steroid pathway 7.14%

Family Distribution

1961 Candidate Genes

C3'H/CYP98A 5.84% C4H 5.81% UGT 5.61% BAHD 5.31% 7DLGT 4.85% UFGT 4.65% POD 4.12% CYP76 4.12%

Other Families 59.69%

More Families (96)

IFS 171 3.91% T3O 142 3.25% 4CL 129 2.95% DWF4/CYP90B1 108 2.47% CAS 91 2.08% F3H 90 2.06% F3'H/CYP75B 83 1.9% CAD 78 1.79% LAC 77 1.76% BR6OX2/CYP85A2 75 1.72% NMT 73 1.67% SMT1/SMT2/SMT3 69 1.58% STR 63 1.44% TRI/TRII 62 1.42% CODM/T6ODM 58 1.33% GES 50 1.14% TPS 50 1.14% H6H 46 1.05% TAT 46 1.05% T16H 42 0.96% G8O/G8H 40 0.92% GS 39 0.89% HCT 39 0.89% CYP71 39 0.89% COMT 36 0.82% IO 33 0.76% PAL 33 0.76% CSE 33 0.76% CYP90D1 33 0.76% PMT 32 0.73% IFR 32 0.73% RAS 30 0.69% SLS 27 0.62% 16OMT 27 0.62% SGD 25 0.57% FNS 25 0.57% BR6OX1/CYP85A1 25 0.57% PYKS 24 0.55% ANR 23 0.53% F3'5'H/CYP75A 23 0.53% CPD/CYP90A1 22 0.5% COR 21 0.48% BBE 20 0.46% F5H/CYP84A 19 0.43% 7DLH 17 0.39% CYP51G1 15 0.34% CYP80B1 14 0.32% NCS 14 0.32% CCR 14 0.32% LAMT 13 0.3% 8HGO 13 0.3% DFR 13 0.3% CNMT 11 0.25% CPR 11 0.25% MPO 10 0.23% CCoAOMT 8 0.18% MVD 8 0.18% ISY 7 0.16% ANS/LDOX 7 0.16% DXS 7 0.16% AACT 7 0.16% HMGR 7 0.16% TYDC_DDC 6 0.14% CHI 6 0.14% FLS 6 0.14% SQE 6 0.14% GGPPS 6 0.14% MVK 6 0.14% SQS/FDFT1 5 0.11% MCT/IspD 5 0.11% CMK/IspE 5 0.11% FPPS 5 0.11% CHS 4 0.09% HPPR 4 0.09% DXR 4 0.09% TDC 3 0.07% ODC 3 0.07% DWF7 3 0.07% CYP80F1 2 0.05% CYP719 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% DWF1 2 0.05% SMO1/SMO2 2 0.05% CPI1 2 0.05% ROT3/CYP90C1 2 0.05% DET2 2 0.05% DWF5 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% MDS/IspF 2 0.05% PMK 2 0.05% HYD1 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	583	21	UGT (227)	View species results
Phenylpropanoid pathway	399	13	POD (167)	View species results
Alkaloid pathway	395	21	7DLGT (114)	View species results
Flavonoid pathway	271	11	UFGT (192)	View species results
Rosmarinic acid pathway	173	7	C4H (68)	View species results
Steroid pathway	140	14	CAS (84)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1623	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	301	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
alnus_rubra_ALNRU00080164-RA	Alkaloid	NMT	low	borderline	NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
alnus_rubra_ALNRU00080710-RA	Alkaloid	NMT	low	borderline	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
alnus_rubra_ALNRU00081311-RA	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
alnus_rubra_ALNRU00085533-RA	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
alnus_rubra_ALNRU00094339-RA	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
alnus_rubra_ALNRU00098856-RA	Alkaloid	NMT	low	borderline	NMT__00023__sp_O82210_ANM12_ARATH
alnus_rubra_ALNRU00112043-RA	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
alnus_rubra_ALNRU00124415-RA	Alkaloid	NMT	low	borderline	NMT__00068__sp_Q9XI84_RBCMT_ARATH
alnus_rubra_ALNRU00124718-RA	Alkaloid	NMT	medium	borderline	NMT__00018__sp_I1M2U5_NAMT1_SOYBN
alnus_rubra_ALNRU00125629-RA	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
alnus_rubra_ALNRU00125633-RA	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
alnus_rubra_ALNRU00125634-RA	Alkaloid	NMT	medium	pass	NMT__00011__sp_A9X7L0_ANMT_RUTGR
alnus_rubra_ALNRU00126052-RA	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
alnus_rubra_ALNRU00126354-RA	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
alnus_rubra_ALNRU00130565-RA	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
alnus_rubra_ALNRU00130952-RA	Alkaloid	NMT	low	borderline	NMT__00015__sp_C8YTM5_PEAM2_WHEAT
alnus_rubra_ALNRU00131065-RA	Alkaloid	NMT	low	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
alnus_rubra_ALNRU00131066-RA	Alkaloid	NMT	medium	pass	NMT__00057__sp_Q9FR44_PEAM1_ARATH
alnus_rubra_ALNRU00131069-RA	Alkaloid	NMT	medium	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
alnus_rubra_ALNRU00134511-RA	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
alnus_rubra_ALNRU00136951-RA	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
alnus_rubra_ALNRU00139182-RA	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
alnus_rubra_ALNRU00139428-RA	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH