PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00000647-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00003585-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00003592-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00005675-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005679-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005687-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005709-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005718-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00005719-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005728-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00005734-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005735-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005737-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005806-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00005808-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00010204-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00010208-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00010214-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00011109-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00012147-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00012154-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00014663-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00014667-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00014681-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00014699-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00015020-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00015031-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00028207-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00028918-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00031790-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00032849-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00032935-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00034305-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00034306-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00034540-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00035364-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00038274-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00041657-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00041669-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00044165-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00045783-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00054443-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00062711-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00065523-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00065576-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00065587-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00071474-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00071475-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00073283-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00073382-RA Steroid SMT1/SMT2/SMT3 low borderline