PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00098087-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00101754-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00104989-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00104993-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00106696-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00106719-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00106780-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00108102-RA Alkaloid T3O medium pass
alnus_rubra_ALNRU00114399-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00115589-RA Alkaloid T3O low borderline
alnus_rubra_ALNRU00119461-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00121229-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00122902-RA Alkaloid T3O medium pass
alnus_rubra_ALNRU00123666-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00124558-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00125256-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00125261-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00125277-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00125385-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00127174-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00128741-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00128747-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00129986-RA Alkaloid T3O low borderline
alnus_rubra_ALNRU00130478-RA Alkaloid T3O medium pass
alnus_rubra_ALNRU00132175-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00132181-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00132386-RA Alkaloid T3O low borderline
alnus_rubra_ALNRU00132533-RA Alkaloid T3O medium pass
alnus_rubra_ALNRU00135122-RA Alkaloid T3O low borderline
alnus_rubra_ALNRU00135812-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00136620-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00137130-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00137293-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00138161-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00138548-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00138589-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00138591-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00140193-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00140725-RA Alkaloid T3O medium pass
alnus_rubra_ALNRU00140729-RA Alkaloid T3O medium pass
alnus_rubra_ALNRU00141243-RA Alkaloid T3O medium borderline
alnus_rubra_ALNRU00141326-RA Alkaloid T3O low borderline