PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

2075
Candidate Protein Records
1961
Pathway-Level Records
4369
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.73% Phenylpropanoid pathway 20.35% Alkaloid pathway 20.14% Flavonoid pathway 13.82% Rosmarinic acid pathway 8.82% Steroid pathway 7.14%
Family Distribution
C3'H/CYP98A 5.84% C4H 5.81% UGT 5.61% BAHD 5.31% 7DLGT 4.85% UFGT 4.65% POD 4.12% CYP76 4.12%
Other Families 59.69%
More Families (96)
IFS 171 3.91% T3O 142 3.25% 4CL 129 2.95% DWF4/CYP90B1 108 2.47% CAS 91 2.08% F3H 90 2.06% F3'H/CYP75B 83 1.9% CAD 78 1.79% LAC 77 1.76% BR6OX2/CYP85A2 75 1.72% NMT 73 1.67% SMT1/SMT2/SMT3 69 1.58% STR 63 1.44% TRI/TRII 62 1.42% CODM/T6ODM 58 1.33% GES 50 1.14% TPS 50 1.14% H6H 46 1.05% TAT 46 1.05% T16H 42 0.96% G8O/G8H 40 0.92% GS 39 0.89% HCT 39 0.89% CYP71 39 0.89% COMT 36 0.82% IO 33 0.76% PAL 33 0.76% CSE 33 0.76% CYP90D1 33 0.76% PMT 32 0.73% IFR 32 0.73% RAS 30 0.69% SLS 27 0.62% 16OMT 27 0.62% SGD 25 0.57% FNS 25 0.57% BR6OX1/CYP85A1 25 0.57% PYKS 24 0.55% ANR 23 0.53% F3'5'H/CYP75A 23 0.53% CPD/CYP90A1 22 0.5% COR 21 0.48% BBE 20 0.46% F5H/CYP84A 19 0.43% 7DLH 17 0.39% CYP51G1 15 0.34% CYP80B1 14 0.32% NCS 14 0.32% CCR 14 0.32% LAMT 13 0.3% 8HGO 13 0.3% DFR 13 0.3% CNMT 11 0.25% CPR 11 0.25% MPO 10 0.23% CCoAOMT 8 0.18% MVD 8 0.18% ISY 7 0.16% ANS/LDOX 7 0.16% DXS 7 0.16% AACT 7 0.16% HMGR 7 0.16% TYDC_DDC 6 0.14% CHI 6 0.14% FLS 6 0.14% SQE 6 0.14% GGPPS 6 0.14% MVK 6 0.14% SQS/FDFT1 5 0.11% MCT/IspD 5 0.11% CMK/IspE 5 0.11% FPPS 5 0.11% CHS 4 0.09% HPPR 4 0.09% DXR 4 0.09% TDC 3 0.07% ODC 3 0.07% DWF7 3 0.07% CYP80F1 2 0.05% CYP719 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% DWF1 2 0.05% SMO1/SMO2 2 0.05% CPI1 2 0.05% ROT3/CYP90C1 2 0.05% DET2 2 0.05% DWF5 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% MDS/IspF 2 0.05% PMK 2 0.05% HYD1 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
alnus_rubra_ALNRU00134821-RA Terpenoid UGT medium pass UGT__00080__sp_Q94AB5_U7E12_ARATH
alnus_rubra_ALNRU00135703-RA Terpenoid UGT low borderline UGT__00098__sp_Q9LTH2_U76E2_ARATH
alnus_rubra_ALNRU00136036-RA Terpenoid UGT medium pass UGT__00022__sp_B2XBQ5_85A19_PRUDU
alnus_rubra_ALNRU00136043-RA Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
alnus_rubra_ALNRU00137584-RA Terpenoid UGT medium pass UGT__00098__sp_Q9LTH2_U76E2_ARATH
alnus_rubra_ALNRU00137587-RA Terpenoid UGT medium pass UGT__00116__sp_U3UA11_UGT7_CATRO
alnus_rubra_ALNRU00137805-RA Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
alnus_rubra_ALNRU00137806-RA Terpenoid UGT medium pass UGT__00117__sp_U5NH37_7DLGT_CATRO
alnus_rubra_ALNRU00138714-RA Terpenoid UGT medium pass UGT__00084__sp_Q9FI99_U76C1_ARATH
alnus_rubra_ALNRU00138721-RA Terpenoid UGT medium pass UGT__00117__sp_U5NH37_7DLGT_CATRO
alnus_rubra_ALNRU00139342-RA Terpenoid UGT medium pass UGT__00016__sp_A0A193AUF6_GGT23_PUNGR
alnus_rubra_ALNRU00139343-RA Terpenoid UGT medium pass UGT__00048__sp_O22182_U84B1_ARATH
alnus_rubra_ALNRU00139344-RA Terpenoid UGT medium pass UGT__00015__sp_A0A193AU77_GGT24_PUNGR
alnus_rubra_ALNRU00140412-RA Terpenoid UGT medium pass UGT__00069__sp_Q0WW21_U75C1_ARATH
alnus_rubra_ALNRU00140414-RA Terpenoid UGT medium pass UGT__00086__sp_Q9LFJ8_U78D2_ARATH
alnus_rubra_ALNRU00143108-RA Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH