PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00060312-RA Flavonoid ANR medium pass
alnus_rubra_ALNRU00062009-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00065491-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00065496-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00065501-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00065507-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00069900-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00070320-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00070321-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00070334-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00072835-RA Flavonoid ANR low borderline
alnus_rubra_ALNRU00099517-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00112394-RA Flavonoid ANR low borderline
alnus_rubra_ALNRU00119707-RA Flavonoid ANR low borderline
alnus_rubra_ALNRU00122789-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00124301-RA Flavonoid ANR medium borderline
alnus_rubra_ALNRU00029548-RA Flavonoid ANS/LDOX low borderline
alnus_rubra_ALNRU00065984-RA Flavonoid ANS/LDOX medium borderline
alnus_rubra_ALNRU00086293-RA Flavonoid ANS/LDOX medium borderline
alnus_rubra_ALNRU00094138-RA Flavonoid ANS/LDOX medium borderline
alnus_rubra_ALNRU00094902-RA Flavonoid ANS/LDOX medium borderline
alnus_rubra_ALNRU00099290-RA Flavonoid ANS/LDOX low borderline
alnus_rubra_ALNRU00108872-RA Flavonoid ANS/LDOX medium borderline
alnus_rubra_ALNRU00006441-RA Flavonoid C4H low borderline
alnus_rubra_ALNRU00006955-RA Flavonoid C4H low borderline
alnus_rubra_ALNRU00028013-RA Flavonoid C4H low borderline
alnus_rubra_ALNRU00034233-RA Flavonoid C4H medium borderline
alnus_rubra_ALNRU00092227-RA Flavonoid C4H medium pass
alnus_rubra_ALNRU00128276-RA Flavonoid C4H low borderline
alnus_rubra_ALNRU00128354-RA Flavonoid C4H medium pass
alnus_rubra_ALNRU00021744-RA Flavonoid CHI medium pass
alnus_rubra_ALNRU00021749-RA Flavonoid CHI medium pass
alnus_rubra_ALNRU00021754-RA Flavonoid CHI medium pass
alnus_rubra_ALNRU00043373-RA Flavonoid CHI medium pass
alnus_rubra_ALNRU00071279-RA Flavonoid CHI medium pass
alnus_rubra_ALNRU00086520-RA Flavonoid CHI medium pass
alnus_rubra_ALNRU00052590-RA Flavonoid CHS medium pass
alnus_rubra_ALNRU00080658-RA Flavonoid CHS medium pass
alnus_rubra_ALNRU00080685-RA Flavonoid CHS medium pass
alnus_rubra_ALNRU00080687-RA Flavonoid CHS medium pass
alnus_rubra_ALNRU00000329-RA Flavonoid DFR medium borderline
alnus_rubra_ALNRU00009380-RA Flavonoid DFR medium borderline
alnus_rubra_ALNRU00009382-RA Flavonoid DFR medium borderline
alnus_rubra_ALNRU00035474-RA Flavonoid DFR medium borderline
alnus_rubra_ALNRU00054025-RA Flavonoid DFR low borderline
alnus_rubra_ALNRU00065510-RA Flavonoid DFR medium borderline
alnus_rubra_ALNRU00077261-RA Flavonoid DFR medium pass
alnus_rubra_ALNRU00089346-RA Flavonoid DFR medium borderline
alnus_rubra_ALNRU00099520-RA Flavonoid DFR medium borderline
alnus_rubra_ALNRU00115630-RA Flavonoid DFR low borderline