Alnus rubra (alnus_rubra)
/
Imported from atlas release summary for Alnus rubra.
1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1961
Candidate Genes
C3'H/CYP98A
5.84%
C4H
5.81%
UGT
5.61%
BAHD
5.31%
7DLGT
4.85%
UFGT
4.65%
POD
4.12%
CYP76
4.12%
Other Families
59.69%
More Families (96)
IFS
171
3.91%
T3O
142
3.25%
4CL
129
2.95%
DWF4/CYP90B1
108
2.47%
CAS
91
2.08%
F3H
90
2.06%
F3'H/CYP75B
83
1.9%
CAD
78
1.79%
LAC
77
1.76%
BR6OX2/CYP85A2
75
1.72%
NMT
73
1.67%
SMT1/SMT2/SMT3
69
1.58%
STR
63
1.44%
TRI/TRII
62
1.42%
CODM/T6ODM
58
1.33%
GES
50
1.14%
TPS
50
1.14%
H6H
46
1.05%
TAT
46
1.05%
T16H
42
0.96%
G8O/G8H
40
0.92%
GS
39
0.89%
HCT
39
0.89%
CYP71
39
0.89%
COMT
36
0.82%
IO
33
0.76%
PAL
33
0.76%
CSE
33
0.76%
CYP90D1
33
0.76%
PMT
32
0.73%
IFR
32
0.73%
RAS
30
0.69%
SLS
27
0.62%
16OMT
27
0.62%
SGD
25
0.57%
FNS
25
0.57%
BR6OX1/CYP85A1
25
0.57%
PYKS
24
0.55%
ANR
23
0.53%
F3'5'H/CYP75A
23
0.53%
CPD/CYP90A1
22
0.5%
COR
21
0.48%
BBE
20
0.46%
F5H/CYP84A
19
0.43%
7DLH
17
0.39%
CYP51G1
15
0.34%
CYP80B1
14
0.32%
NCS
14
0.32%
CCR
14
0.32%
LAMT
13
0.3%
8HGO
13
0.3%
DFR
13
0.3%
CNMT
11
0.25%
CPR
11
0.25%
MPO
10
0.23%
CCoAOMT
8
0.18%
MVD
8
0.18%
ISY
7
0.16%
ANS/LDOX
7
0.16%
DXS
7
0.16%
AACT
7
0.16%
HMGR
7
0.16%
TYDC_DDC
6
0.14%
CHI
6
0.14%
FLS
6
0.14%
SQE
6
0.14%
GGPPS
6
0.14%
MVK
6
0.14%
SQS/FDFT1
5
0.11%
MCT/IspD
5
0.11%
CMK/IspE
5
0.11%
FPPS
5
0.11%
CHS
4
0.09%
HPPR
4
0.09%
DXR
4
0.09%
TDC
3
0.07%
ODC
3
0.07%
DWF7
3
0.07%
CYP80F1
2
0.05%
CYP719
2
0.05%
ADC
2
0.05%
XMT_MXMT_DXMT
2
0.05%
DWF1
2
0.05%
SMO1/SMO2
2
0.05%
CPI1
2
0.05%
ROT3/CYP90C1
2
0.05%
DET2
2
0.05%
DWF5
2
0.05%
HMGS
2
0.05%
HDR/IspH
2
0.05%
MDS/IspF
2
0.05%
PMK
2
0.05%
HYD1
1
0.02%
FK
1
0.02%
HDS/IspG
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 583 | 21 | UGT (227) | View species results |
| Phenylpropanoid pathway | 399 | 13 | POD (167) | View species results |
| Alkaloid pathway | 395 | 21 | 7DLGT (114) | View species results |
| Flavonoid pathway | 271 | 11 | UFGT (192) | View species results |
| Rosmarinic acid pathway | 173 | 7 | C4H (68) | View species results |
| Steroid pathway | 140 | 14 | CAS (84) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1623 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 301 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| alnus_rubra_ALNRU00052679-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00059694-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00060055-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00062402-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00064287-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00064292-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00064311-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00064325-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00064326-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00064668-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00064673-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00064682-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00065774-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00065781-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00070194-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00070206-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00072988-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00073152-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00073171-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00074000-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00077056-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00080511-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00080517-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00080889-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00087251-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00090402-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00091679-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00091716-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00092227-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00092500-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093828-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00093829-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093869-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093872-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093881-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093904-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093909-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093914-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093934-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00093937-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00094180-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00094183-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00094187-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00094205-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00094207-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00094212-RA | Rosmarinic Acid | C4H | medium | pass |
| alnus_rubra_ALNRU00094835-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00095966-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00096955-RA | Rosmarinic Acid | C4H | low | borderline |
| alnus_rubra_ALNRU00096957-RA | Rosmarinic Acid | C4H | low | borderline |