PlantSME Plant secondary metabolism enzyme database

Archidium alternifolium (archidium_alternifolium)

Imported from atlas release summary for Archidium alternifolium.

891
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 259 11 POD (97) View species results
Terpenoid pathway 190 20 BAHD (58) View species results
Alkaloid pathway 161 19 PYKS (29) View species results
Flavonoid pathway 135 10 PAL (38) View species results
Rosmarinic acid pathway 95 7 PAL (38) View species results
Steroid pathway 51 12 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 897 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 126 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Aaltescaffold_110169180 Terpenoid DXS medium pass
Aaltescaffold_10020590 Terpenoid FPPS low borderline
Aaltescaffold_10049880 Terpenoid FPPS low borderline
Aaltescaffold_110166290 Terpenoid FPPS low borderline
Aaltescaffold_30277850 Terpenoid FPPS medium pass
Aaltescaffold_30302560 Terpenoid FPPS medium pass
Aaltescaffold_90516210 Terpenoid FPPS low borderline
Aaltescaffold_40345490 Terpenoid GGPPS medium borderline
Aaltescaffold_60417270 Terpenoid GGPPS medium borderline
Aaltescaffold_70455790 Terpenoid GGPPS medium borderline
Aaltescaffold_70462770 Terpenoid GGPPS medium borderline
Aaltescaffold_80483550 Terpenoid GGPPS medium borderline
Aaltescaffold_50376210 Terpenoid HDR/IspH high pass
Aaltescaffold_110134900 Terpenoid HDS/IspG low borderline
Aaltescaffold_70445170 Terpenoid HDS/IspG high pass
Aaltescaffold_110137010 Terpenoid HMGR low borderline
Aaltescaffold_20232020 Terpenoid HMGR medium pass
Aaltescaffold_30265780 Terpenoid HMGR medium pass
Aaltescaffold_60424500 Terpenoid HMGS high pass
Aaltescaffold_70441680 Terpenoid HMGS low borderline
Aaltescaffold_80497480 Terpenoid HMGS high pass
Aaltescaffold_110167830 Terpenoid IDI low borderline
Aaltescaffold_20192970 Terpenoid IDI low borderline
Aaltescaffold_40333950 Terpenoid IDI medium pass
Aaltescaffold_100093930 Terpenoid MCT/IspD low borderline
Aaltescaffold_30278270 Terpenoid MCT/IspD high pass
Aaltescaffold_60427790 Terpenoid MCT/IspD low borderline
Aaltescaffold_90533080 Terpenoid MCT/IspD medium pass
Aaltescaffold_100115840 Terpenoid MDS/IspF high pass
Aaltescaffold_100116020 Terpenoid MDS/IspF high pass
Aaltescaffold_30281670 Terpenoid MVD medium pass
Aaltescaffold_60429540 Terpenoid MVD medium pass
Aaltescaffold_90522700 Terpenoid MVD low borderline
Aaltescaffold_10032970 Terpenoid MVK medium pass
Aaltescaffold_30315930 Terpenoid MVK medium pass
Aaltescaffold_30316020 Terpenoid MVK medium pass
Aaltescaffold_60415860 Terpenoid MVK low borderline
Aaltescaffold_80482760 Terpenoid MVK low borderline
Aaltescaffold_90507920 Terpenoid MVK low borderline
Aaltescaffold_10064930 Terpenoid PMK low borderline
Aaltescaffold_30277590 Terpenoid PMK low borderline
Aaltescaffold_80501800 Terpenoid PMK medium pass
Aaltescaffold_10072260 Terpenoid TPS medium pass
Aaltescaffold_10072380 Terpenoid TPS medium pass
Aaltescaffold_10072390 Terpenoid TPS medium pass
Aaltescaffold_110172440 Terpenoid TPS low borderline
Aaltescaffold_30249620 Terpenoid TPS medium pass
Aaltescaffold_30289910 Terpenoid TPS medium pass
Aaltescaffold_30290010 Terpenoid TPS medium pass
Aaltescaffold_50358880 Terpenoid TPS medium pass