PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
avicennia_marina_AM_27527 Flavonoid 4CL medium pass
avicennia_marina_AM_27590 Flavonoid 4CL medium pass
avicennia_marina_AM_29185 Flavonoid 4CL medium pass
avicennia_marina_AM_29187 Flavonoid 4CL medium pass
avicennia_marina_AM_29575 Flavonoid 4CL medium pass
avicennia_marina_AM_29729 Flavonoid 4CL medium pass
avicennia_marina_AM_29849 Flavonoid 4CL medium pass
avicennia_marina_AM_30985 Flavonoid 4CL medium pass
avicennia_marina_AM_31429 Flavonoid 4CL low borderline
avicennia_marina_AM_32404 Flavonoid 4CL medium pass
avicennia_marina_AM_33018 Flavonoid 4CL low borderline
avicennia_marina_AM_33021 Flavonoid 4CL medium pass
avicennia_marina_AM_33058 Flavonoid 4CL low borderline
avicennia_marina_AM_00758 Flavonoid ANR medium borderline
avicennia_marina_AM_00843 Flavonoid ANR medium borderline
avicennia_marina_AM_02349 Flavonoid ANR low borderline
avicennia_marina_AM_03419 Flavonoid ANR medium borderline
avicennia_marina_AM_03882 Flavonoid ANR medium borderline
avicennia_marina_AM_03883 Flavonoid ANR medium borderline
avicennia_marina_AM_05211 Flavonoid ANR medium borderline
avicennia_marina_AM_05584 Flavonoid ANR medium pass
avicennia_marina_AM_06748 Flavonoid ANR medium borderline
avicennia_marina_AM_06824 Flavonoid ANR medium borderline
avicennia_marina_AM_07904 Flavonoid ANR low borderline
avicennia_marina_AM_09086 Flavonoid ANR low borderline
avicennia_marina_AM_09132 Flavonoid ANR low borderline
avicennia_marina_AM_10308 Flavonoid ANR medium borderline
avicennia_marina_AM_10309 Flavonoid ANR medium borderline
avicennia_marina_AM_10373 Flavonoid ANR low borderline
avicennia_marina_AM_12855 Flavonoid ANR medium borderline
avicennia_marina_AM_15209 Flavonoid ANR medium borderline
avicennia_marina_AM_15210 Flavonoid ANR medium borderline
avicennia_marina_AM_15717 Flavonoid ANR low borderline
avicennia_marina_AM_17652 Flavonoid ANR low borderline
avicennia_marina_AM_18269 Flavonoid ANR medium borderline
avicennia_marina_AM_18862 Flavonoid ANR low borderline
avicennia_marina_AM_19732 Flavonoid ANR medium borderline
avicennia_marina_AM_20836 Flavonoid ANR medium borderline
avicennia_marina_AM_20901 Flavonoid ANR medium borderline
avicennia_marina_AM_21349 Flavonoid ANR medium borderline
avicennia_marina_AM_21736 Flavonoid ANR medium borderline
avicennia_marina_AM_23654 Flavonoid ANR medium borderline
avicennia_marina_AM_23655 Flavonoid ANR medium borderline
avicennia_marina_AM_23656 Flavonoid ANR medium borderline
avicennia_marina_AM_23936 Flavonoid ANR medium borderline
avicennia_marina_AM_23937 Flavonoid ANR medium borderline
avicennia_marina_AM_23938 Flavonoid ANR medium borderline
avicennia_marina_AM_28300 Flavonoid ANR medium borderline
avicennia_marina_AM_32501 Flavonoid ANR medium borderline
avicennia_marina_AM_01039 Flavonoid ANS/LDOX medium borderline