PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Gene Pathway Family Confidence Status
avicennia_marina_AM_03616 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_04912 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_09992 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_11736 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_12226 Flavonoid ANS/LDOX low borderline
avicennia_marina_AM_15503 Flavonoid ANS/LDOX medium pass
avicennia_marina_AM_22665 Flavonoid ANS/LDOX low borderline
avicennia_marina_AM_22670 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_23355 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_24161 Flavonoid ANS/LDOX low borderline
avicennia_marina_AM_25056 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_25843 Flavonoid ANS/LDOX low borderline
avicennia_marina_AM_26523 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_26524 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_27542 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_29346 Flavonoid ANS/LDOX medium borderline
avicennia_marina_AM_00093 Flavonoid C4H low borderline
avicennia_marina_AM_12193 Flavonoid C4H medium borderline
avicennia_marina_AM_14397 Flavonoid C4H medium borderline
avicennia_marina_AM_23715 Flavonoid C4H medium borderline
avicennia_marina_AM_24115 Flavonoid C4H low borderline
avicennia_marina_AM_27184 Flavonoid C4H medium borderline
avicennia_marina_AM_27988 Flavonoid C4H medium borderline
avicennia_marina_AM_27989 Flavonoid C4H medium pass
avicennia_marina_AM_07931 Flavonoid CHI medium pass
avicennia_marina_AM_19222 Flavonoid CHI medium pass
avicennia_marina_AM_25302 Flavonoid CHI medium pass
avicennia_marina_AM_01926 Flavonoid CHS medium pass
avicennia_marina_AM_06244 Flavonoid CHS medium pass
avicennia_marina_AM_06247 Flavonoid CHS medium pass
avicennia_marina_AM_09298 Flavonoid CHS low borderline
avicennia_marina_AM_15092 Flavonoid CHS low borderline
avicennia_marina_AM_15179 Flavonoid CHS medium pass
avicennia_marina_AM_15448 Flavonoid CHS low borderline
avicennia_marina_AM_15449 Flavonoid CHS medium pass
avicennia_marina_AM_20747 Flavonoid CHS medium pass
avicennia_marina_AM_20749 Flavonoid CHS medium pass
avicennia_marina_AM_21529 Flavonoid CHS low borderline
avicennia_marina_AM_28998 Flavonoid CHS low borderline
avicennia_marina_AM_14735 Flavonoid DFR low borderline
avicennia_marina_AM_16023 Flavonoid DFR medium borderline
avicennia_marina_AM_21737 Flavonoid DFR low borderline
avicennia_marina_AM_24656 Flavonoid DFR medium borderline
avicennia_marina_AM_25878 Flavonoid DFR low borderline
avicennia_marina_AM_26826 Flavonoid DFR medium borderline
avicennia_marina_AM_27481 Flavonoid DFR medium borderline
avicennia_marina_AM_28503 Flavonoid DFR low borderline
avicennia_marina_AM_28555 Flavonoid DFR medium borderline
avicennia_marina_AM_30003 Flavonoid DFR low borderline
avicennia_marina_AM_30368 Flavonoid DFR medium borderline