PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status
Cretscaffold85940_cov860199860.1 Terpenoid CYP76 medium borderline
Cretscaffold85940_cov860200370.1 Terpenoid CYP76 medium pass
Cretscaffold85944_cov790200940.1 Terpenoid CYP76 medium pass
Cretscaffold85962_cov920206870.1 Terpenoid CYP76 medium borderline
Cretscaffold85962_cov920206880.1 Terpenoid CYP76 medium borderline
Cretscaffold85962_cov920206910.1 Terpenoid CYP76 medium borderline
Cretscaffold85974_cov870215290.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222350.1 Terpenoid CYP76 medium pass
Cretscaffold85995_cov800222360.1 Terpenoid CYP76 medium pass
Cretscaffold85995_cov800222460.1 Terpenoid CYP76 medium pass
Cretscaffold85995_cov800222480.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222490.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222530.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222540.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222570.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222580.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222590.1 Terpenoid CYP76 medium pass
Cretscaffold85995_cov800222830.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222850.1 Terpenoid CYP76 medium borderline
Cretscaffold85995_cov800222890.1 Terpenoid CYP76 medium borderline
Cretscaffold86001_cov870224340.1 Terpenoid CYP76 medium pass
Cretscaffold86001_cov870224350.1 Terpenoid CYP76 low borderline
Cretscaffold86001_cov870224360.1 Terpenoid CYP76 medium borderline
Cretscaffold86021_cov880226170.1 Terpenoid CYP76 low borderline
Cretscaffold86026_cov920228980.1 Terpenoid CYP76 medium borderline
Cretscaffold86027_cov910230280.1 Terpenoid CYP76 medium borderline
Cretscaffold86027_cov910230290.1 Terpenoid CYP76 medium borderline
Cretscaffold86027_cov910230300.1 Terpenoid CYP76 medium pass
Cretscaffold86027_cov910230710.1 Terpenoid CYP76 medium borderline
Cretscaffold86027_cov910230710.2 Terpenoid CYP76 medium borderline
Cretscaffold86027_cov910230710.3 Terpenoid CYP76 medium borderline
Cretscaffold86027_cov910230720.1 Terpenoid CYP76 medium borderline
Cretscaffold86027_cov910233950.1 Terpenoid CYP76 low borderline
Cretscaffold86027_cov910235150.1 Terpenoid CYP76 medium pass
Cretscaffold86027_cov910235530.1 Terpenoid CYP76 medium pass
Cretscaffold86027_cov910237020.3 Terpenoid CYP76 low borderline
Cretscaffold86027_cov910237020.4 Terpenoid CYP76 low borderline
Cretscaffold86027_cov910238380.1 Terpenoid CYP76 low borderline
Cretscaffold86027_cov910238390.1 Terpenoid CYP76 medium pass
Cretscaffold86027_cov910238400.1 Terpenoid CYP76 low borderline
Cretscaffold86027_cov910238410.1 Terpenoid CYP76 low borderline
Cretscaffold86027_cov910238410.2 Terpenoid CYP76 low borderline
Cretscaffold86027_cov910238420.1 Terpenoid CYP76 medium borderline
Cretscaffold86027_cov910238450.1 Terpenoid CYP76 low borderline
Cretscaffold86029_cov910238800.1 Terpenoid CYP76 medium pass
Cretscaffold86030_cov920239630.1 Terpenoid CYP76 medium borderline
Cretscaffold86030_cov920239640.1 Terpenoid CYP76 medium borderline
Cretscaffold86030_cov920239640.2 Terpenoid CYP76 medium borderline
Cretscaffold86030_cov920239650.1 Terpenoid CYP76 low borderline
Cretscaffold86030_cov920239740.1 Terpenoid CYP76 medium pass