PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Cretscaffold514_cov870099410.1 Flavonoid F3H medium borderline
Cretscaffold573_cov840109930.1 Flavonoid F3H medium borderline
Cretscaffold573_cov840110300.1 Flavonoid F3H medium borderline
Cretscaffold5933_cov910112430.1 Flavonoid F3H medium pass
Cretscaffold60515_cov810113600.1 Flavonoid F3H medium borderline
Cretscaffold7712_cov1110120440.1 Flavonoid F3H low borderline
Cretscaffold82937_cov630125710.1 Flavonoid F3H medium borderline
Cretscaffold83267_cov900126600.1 Flavonoid F3H medium borderline
Cretscaffold835_cov910130160.1 Flavonoid F3H medium borderline
Cretscaffold835_cov910130170.1 Flavonoid F3H medium borderline
Cretscaffold835_cov910130180.1 Flavonoid F3H medium borderline
Cretscaffold835_cov910130190.1 Flavonoid F3H medium borderline
Cretscaffold835_cov910130200.1 Flavonoid F3H medium borderline
Cretscaffold835_cov910130210.1 Flavonoid F3H medium borderline
Cretscaffold84509_cov560134470.1 Flavonoid F3H medium pass
Cretscaffold84509_cov560134480.1 Flavonoid F3H medium borderline
Cretscaffold849_cov840135030.1 Flavonoid F3H medium borderline
Cretscaffold85874_cov810139800.1 Flavonoid F3H medium borderline
Cretscaffold85874_cov810139810.1 Flavonoid F3H medium borderline
Cretscaffold85874_cov810139820.1 Flavonoid F3H medium borderline
Cretscaffold85874_cov810139830.1 Flavonoid F3H medium borderline
Cretscaffold85874_cov810139840.1 Flavonoid F3H medium borderline
Cretscaffold85874_cov810139850.1 Flavonoid F3H medium borderline
Cretscaffold85874_cov810139860.1 Flavonoid F3H medium borderline
Cretscaffold85899_cov890143050.1 Flavonoid F3H medium borderline
Cretscaffold85899_cov890143210.1 Flavonoid F3H medium borderline
Cretscaffold85899_cov890144820.1 Flavonoid F3H medium borderline
Cretscaffold85899_cov890144820.2 Flavonoid F3H medium borderline
Cretscaffold85909_cov900151730.1 Flavonoid F3H medium borderline
Cretscaffold85912_cov810160780.1 Flavonoid F3H medium borderline
Cretscaffold85913_cov830161880.1 Flavonoid F3H medium borderline
Cretscaffold85913_cov830161890.1 Flavonoid F3H medium borderline
Cretscaffold85915_cov840163460.1 Flavonoid F3H medium borderline
Cretscaffold85915_cov840163480.1 Flavonoid F3H medium borderline
Cretscaffold85918_cov900164660.1 Flavonoid F3H medium borderline
Cretscaffold85918_cov900164670.1 Flavonoid F3H medium borderline
Cretscaffold85918_cov900167520.1 Flavonoid F3H medium borderline
Cretscaffold85918_cov900170780.1 Flavonoid F3H medium borderline
Cretscaffold85918_cov900170790.1 Flavonoid F3H medium borderline
Cretscaffold85918_cov900170800.1 Flavonoid F3H medium borderline
Cretscaffold85918_cov900172300.1 Flavonoid F3H medium borderline
Cretscaffold85918_cov900172740.1 Flavonoid F3H low borderline
Cretscaffold85918_cov900172740.2 Flavonoid F3H low borderline
Cretscaffold85918_cov900172740.3 Flavonoid F3H low borderline
Cretscaffold85918_cov900172740.4 Flavonoid F3H low borderline
Cretscaffold85918_cov900172740.5 Flavonoid F3H low borderline
Cretscaffold85918_cov900172740.6 Flavonoid F3H low borderline
Cretscaffold85918_cov900172740.7 Flavonoid F3H low borderline
Cretscaffold85918_cov900172740.8 Flavonoid F3H low borderline
Cretscaffold85923_cov900175790.1 Flavonoid F3H medium borderline