PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cretscaffold4070_cov900076760.1 Alkaloid T3O medium borderline
Cretscaffold4070_cov900076790.1 Alkaloid T3O medium borderline
Cretscaffold4070_cov900076800.1 Alkaloid T3O medium borderline
Cretscaffold426_cov900080560.1 Alkaloid T3O medium pass
Cretscaffold429_cov910081850.1 Alkaloid T3O medium borderline
Cretscaffold429_cov910081860.1 Alkaloid T3O medium borderline
Cretscaffold429_cov910086140.1 Alkaloid T3O low borderline
Cretscaffold480_cov830092820.1 Alkaloid T3O medium borderline
Cretscaffold521_cov930105740.1 Alkaloid T3O medium borderline
Cretscaffold54310_cov1060108440.1 Alkaloid T3O low borderline
Cretscaffold5442_cov780108520.1 Alkaloid T3O low borderline
Cretscaffold57038_cov1280109470.1 Alkaloid T3O medium borderline
Cretscaffold598_cov830112770.1 Alkaloid T3O low borderline
Cretscaffold65123_cov850116390.1 Alkaloid T3O medium borderline
Cretscaffold6683_cov600117080.1 Alkaloid T3O medium borderline
Cretscaffold70480_cov590118470.1 Alkaloid T3O medium borderline
Cretscaffold79090_cov820121440.1 Alkaloid T3O medium borderline
Cretscaffold804_cov860122190.1 Alkaloid T3O medium borderline
Cretscaffold83267_cov900127920.1 Alkaloid T3O medium borderline
Cretscaffold83267_cov900127930.1 Alkaloid T3O medium borderline
Cretscaffold83267_cov900127960.1 Alkaloid T3O medium borderline
Cretscaffold83267_cov900127990.1 Alkaloid T3O medium borderline
Cretscaffold83267_cov900128000.1 Alkaloid T3O medium borderline
Cretscaffold83675_cov920130960.1 Alkaloid T3O medium pass
Cretscaffold83675_cov920131890.1 Alkaloid T3O medium borderline
Cretscaffold83675_cov920131900.1 Alkaloid T3O medium borderline
Cretscaffold83675_cov920131930.1 Alkaloid T3O medium borderline
Cretscaffold85758_cov930136330.1 Alkaloid T3O medium borderline
Cretscaffold85758_cov930136340.1 Alkaloid T3O medium borderline
Cretscaffold85758_cov930136350.1 Alkaloid T3O medium borderline
Cretscaffold85905_cov920148540.1 Alkaloid T3O medium borderline
Cretscaffold85905_cov920148550.1 Alkaloid T3O medium borderline
Cretscaffold85908_cov640150670.1 Alkaloid T3O medium borderline
Cretscaffold85908_cov640150680.1 Alkaloid T3O medium borderline
Cretscaffold85909_cov900154740.1 Alkaloid T3O medium pass
Cretscaffold85909_cov900156180.1 Alkaloid T3O medium borderline
Cretscaffold85909_cov900156220.1 Alkaloid T3O low borderline
Cretscaffold85909_cov900156230.1 Alkaloid T3O low borderline
Cretscaffold85909_cov900158900.1 Alkaloid T3O medium pass
Cretscaffold85909_cov900159140.1 Alkaloid T3O medium pass
Cretscaffold85909_cov900159140.2 Alkaloid T3O medium pass
Cretscaffold85909_cov900159840.1 Alkaloid T3O medium borderline
Cretscaffold85909_cov900159870.1 Alkaloid T3O medium borderline
Cretscaffold85913_cov830161090.1 Alkaloid T3O medium borderline
Cretscaffold85913_cov830161110.1 Alkaloid T3O medium borderline
Cretscaffold85913_cov830161110.2 Alkaloid T3O medium borderline
Cretscaffold85913_cov830161110.3 Alkaloid T3O medium borderline
Cretscaffold85913_cov830161140.1 Alkaloid T3O medium borderline
Cretscaffold85913_cov830161780.1 Alkaloid T3O low borderline
Cretscaffold85913_cov830162170.1 Alkaloid T3O medium borderline