PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cretscaffold85913_cov830162230.1 Alkaloid T3O medium borderline
Cretscaffold85913_cov830162240.1 Alkaloid T3O medium borderline
Cretscaffold85918_cov900166330.1 Alkaloid T3O medium pass
Cretscaffold85918_cov900167220.1 Alkaloid T3O medium pass
Cretscaffold85918_cov900171380.1 Alkaloid T3O medium pass
Cretscaffold85918_cov900172870.1 Alkaloid T3O medium borderline
Cretscaffold85919_cov740174400.1 Alkaloid T3O medium borderline
Cretscaffold85923_cov900176910.1 Alkaloid T3O medium borderline
Cretscaffold85923_cov900181080.1 Alkaloid T3O medium borderline
Cretscaffold85923_cov900181080.2 Alkaloid T3O medium borderline
Cretscaffold85924_cov870181680.1 Alkaloid T3O medium pass
Cretscaffold85924_cov870182960.1 Alkaloid T3O medium borderline
Cretscaffold85924_cov870183390.1 Alkaloid T3O medium borderline
Cretscaffold85924_cov870184960.1 Alkaloid T3O medium borderline
Cretscaffold85924_cov870184970.1 Alkaloid T3O medium borderline
Cretscaffold85924_cov870185110.1 Alkaloid T3O medium borderline
Cretscaffold85925_cov910186300.1 Alkaloid T3O medium borderline
Cretscaffold85925_cov910187500.1 Alkaloid T3O medium pass
Cretscaffold85925_cov910187740.1 Alkaloid T3O medium pass
Cretscaffold85925_cov910187740.2 Alkaloid T3O low borderline
Cretscaffold85925_cov910187940.1 Alkaloid T3O medium pass
Cretscaffold85925_cov910187970.1 Alkaloid T3O medium borderline
Cretscaffold85925_cov910188510.1 Alkaloid T3O medium pass
Cretscaffold85927_cov850190180.1 Alkaloid T3O medium borderline
Cretscaffold85933_cov910193670.1 Alkaloid T3O medium pass
Cretscaffold85938_cov950197830.1 Alkaloid T3O medium pass
Cretscaffold85940_cov860199820.1 Alkaloid T3O medium borderline
Cretscaffold85940_cov860199830.1 Alkaloid T3O medium borderline
Cretscaffold85940_cov860199840.1 Alkaloid T3O medium borderline
Cretscaffold85940_cov860199860.1 Alkaloid T3O medium borderline
Cretscaffold85962_cov920206080.1 Alkaloid T3O low borderline
Cretscaffold85962_cov920206880.1 Alkaloid T3O medium borderline
Cretscaffold85962_cov920206910.1 Alkaloid T3O medium borderline
Cretscaffold85962_cov920206930.1 Alkaloid T3O medium borderline
Cretscaffold85962_cov920206960.1 Alkaloid T3O medium borderline
Cretscaffold85969_cov760210800.1 Alkaloid T3O medium pass
Cretscaffold85974_cov870215290.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222480.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222490.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222530.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222540.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222570.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222580.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222830.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222850.1 Alkaloid T3O medium borderline
Cretscaffold85995_cov800222890.1 Alkaloid T3O medium borderline
Cretscaffold86001_cov870224360.1 Alkaloid T3O medium borderline
Cretscaffold86021_cov880226190.1 Alkaloid T3O medium borderline
Cretscaffold86021_cov880226880.1 Alkaloid T3O medium borderline
Cretscaffold86026_cov920228980.1 Alkaloid T3O medium borderline