PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold86027_cov910230290.1 Alkaloid T3O medium borderline
Cretscaffold86027_cov910230300.1 Alkaloid T3O medium borderline
Cretscaffold86027_cov910230710.1 Alkaloid T3O medium borderline
Cretscaffold86027_cov910230710.2 Alkaloid T3O medium borderline
Cretscaffold86027_cov910230710.3 Alkaloid T3O medium borderline
Cretscaffold86027_cov910230720.1 Alkaloid T3O medium borderline
Cretscaffold86027_cov910231060.2 Alkaloid T3O low borderline
Cretscaffold86027_cov910235150.1 Alkaloid T3O medium borderline
Cretscaffold86027_cov910238410.1 Alkaloid T3O medium borderline
Cretscaffold86030_cov920239090.1 Alkaloid T3O medium pass
Cretscaffold86030_cov920239790.1 Alkaloid T3O medium borderline
Cretscaffold86040_cov830245610.1 Alkaloid T3O medium pass
Cretscaffold86040_cov830245610.2 Alkaloid T3O medium pass
Cretscaffold86041_cov890246430.1 Alkaloid T3O medium pass
Cretscaffold86041_cov890247130.1 Alkaloid T3O medium borderline
Cretscaffold86042_cov890252120.1 Alkaloid T3O medium borderline
Cretscaffold86048_cov930256540.1 Alkaloid T3O medium borderline
Cretscaffold86048_cov930258040.1 Alkaloid T3O low borderline
Cretscaffold86048_cov930258100.1 Alkaloid T3O medium borderline
Cretscaffold86048_cov930258110.1 Alkaloid T3O medium borderline
Cretscaffold86048_cov930259280.1 Alkaloid T3O medium borderline
Cretscaffold86051_cov840260430.1 Alkaloid T3O medium pass
Cretscaffold86051_cov840260430.2 Alkaloid T3O medium pass
Cretscaffold86051_cov840260440.1 Alkaloid T3O medium pass
Cretscaffold86051_cov840260590.1 Alkaloid T3O medium borderline
Cretscaffold86053_cov880261530.1 Alkaloid T3O medium borderline
Cretscaffold86055_cov850262740.1 Alkaloid T3O medium borderline
Cretscaffold86055_cov850262770.1 Alkaloid T3O medium borderline
Cretscaffold86055_cov850262780.1 Alkaloid T3O medium borderline
Cretscaffold86063_cov860265290.1 Alkaloid T3O medium borderline
Cretscaffold86063_cov860265460.1 Alkaloid T3O medium borderline
Cretscaffold86063_cov860265970.1 Alkaloid T3O medium borderline
Cretscaffold86076_cov900270060.1 Alkaloid T3O medium borderline
Cretscaffold86076_cov900270120.1 Alkaloid T3O medium borderline
Cretscaffold86078_cov820270890.1 Alkaloid T3O medium borderline
Cretscaffold86078_cov820270890.2 Alkaloid T3O medium borderline
Cretscaffold86078_cov820270890.3 Alkaloid T3O medium borderline
Cretscaffold86078_cov820270980.1 Alkaloid T3O medium borderline
Cretscaffold86078_cov820271030.1 Alkaloid T3O low borderline
Cretscaffold86080_cov890271930.1 Alkaloid T3O low borderline
Cretscaffold867_cov800275050.1 Alkaloid T3O medium pass
Cretscaffold867_cov800275050.2 Alkaloid T3O medium pass
Cretscaffold8841_cov910280920.1 Alkaloid T3O medium borderline
Cretscaffold8841_cov910280970.1 Alkaloid T3O medium borderline
Cretscaffold9711_cov1000287490.1 Alkaloid T3O medium borderline
Cretscaffold9711_cov1000287510.1 Alkaloid T3O medium borderline