PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold85919_cov740174270.1 Flavonoid UFGT medium pass
Cretscaffold85919_cov740174290.1 Flavonoid UFGT medium pass
Cretscaffold85919_cov740174300.1 Flavonoid UFGT medium pass
Cretscaffold85919_cov740174320.1 Flavonoid UFGT low borderline
Cretscaffold85919_cov740174330.1 Flavonoid UFGT low borderline
Cretscaffold85923_cov900178770.1 Flavonoid UFGT high pass
Cretscaffold85924_cov870182600.1 Flavonoid UFGT low borderline
Cretscaffold85924_cov870182830.1 Flavonoid UFGT medium pass
Cretscaffold85924_cov870182830.2 Flavonoid UFGT medium pass
Cretscaffold85924_cov870182830.3 Flavonoid UFGT medium pass
Cretscaffold85924_cov870182840.1 Flavonoid UFGT medium pass
Cretscaffold85924_cov870182850.1 Flavonoid UFGT medium pass
Cretscaffold85924_cov870182860.1 Flavonoid UFGT medium pass
Cretscaffold85924_cov870183680.1 Flavonoid UFGT medium pass
Cretscaffold85925_cov910186720.1 Flavonoid UFGT medium pass
Cretscaffold85925_cov910186730.1 Flavonoid UFGT medium pass
Cretscaffold85927_cov850190650.1 Flavonoid UFGT medium pass
Cretscaffold85927_cov850190810.1 Flavonoid UFGT high pass
Cretscaffold85931_cov990191760.1 Flavonoid UFGT medium pass
Cretscaffold85931_cov990191870.1 Flavonoid UFGT low borderline
Cretscaffold85931_cov990191880.1 Flavonoid UFGT high pass
Cretscaffold85950_cov530202100.1 Flavonoid UFGT low borderline
Cretscaffold85956_cov860203290.1 Flavonoid UFGT medium pass
Cretscaffold85956_cov860203680.1 Flavonoid UFGT high pass
Cretscaffold85959_cov710205200.1 Flavonoid UFGT medium pass
Cretscaffold85965_cov810208040.1 Flavonoid UFGT medium pass
Cretscaffold85967_cov920208430.1 Flavonoid UFGT medium pass
Cretscaffold85967_cov920208440.1 Flavonoid UFGT medium pass
Cretscaffold85967_cov920208450.1 Flavonoid UFGT medium pass
Cretscaffold85969_cov760210250.1 Flavonoid UFGT high pass
Cretscaffold85969_cov760210260.1 Flavonoid UFGT high pass
Cretscaffold85969_cov760210350.1 Flavonoid UFGT low borderline
Cretscaffold85969_cov760210680.1 Flavonoid UFGT medium pass
Cretscaffold85970_cov790210920.1 Flavonoid UFGT low borderline
Cretscaffold85972_cov830211200.1 Flavonoid UFGT medium pass
Cretscaffold85972_cov830211200.2 Flavonoid UFGT medium pass
Cretscaffold85972_cov830211200.3 Flavonoid UFGT medium pass
Cretscaffold85977_cov810216370.1 Flavonoid UFGT medium pass
Cretscaffold85977_cov810216380.1 Flavonoid UFGT medium pass
Cretscaffold85982_cov920217670.1 Flavonoid UFGT medium pass
Cretscaffold85982_cov920217680.1 Flavonoid UFGT medium pass
Cretscaffold85988_cov720220770.1 Flavonoid UFGT high pass
Cretscaffold85994_cov870221190.1 Flavonoid UFGT medium pass
Cretscaffold85994_cov870221900.1 Flavonoid UFGT medium pass
Cretscaffold86014_cov1010225300.1 Flavonoid UFGT high pass
Cretscaffold86014_cov1010225330.1 Flavonoid UFGT high pass
Cretscaffold86019_cov820225900.1 Flavonoid UFGT low borderline
Cretscaffold86027_cov910234190.1 Flavonoid UFGT low borderline
Cretscaffold86027_cov910234840.1 Flavonoid UFGT medium pass
Cretscaffold86027_cov910234860.1 Flavonoid UFGT high pass