PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Cretscaffold11980_cov890011950.1 Terpenoid AACT low borderline
Cretscaffold132_cov940017810.1 Terpenoid AACT low borderline
Cretscaffold132_cov940017810.2 Terpenoid AACT low borderline
Cretscaffold132_cov940017810.3 Terpenoid AACT low borderline
Cretscaffold22_cov910036060.1 Terpenoid AACT low borderline
Cretscaffold22_cov910036060.2 Terpenoid AACT low borderline
Cretscaffold521_cov930106050.1 Terpenoid AACT medium borderline
Cretscaffold82373_cov750124790.1 Terpenoid AACT medium borderline
Cretscaffold85905_cov920147980.1 Terpenoid AACT medium borderline
Cretscaffold85918_cov900173120.1 Terpenoid AACT medium borderline
Cretscaffold85918_cov900173120.2 Terpenoid AACT medium borderline
Cretscaffold85918_cov900173120.3 Terpenoid AACT medium borderline
Cretscaffold85918_cov900173120.4 Terpenoid AACT medium borderline
Cretscaffold86026_cov920227410.1 Terpenoid AACT low borderline
Cretscaffold1027_cov900000740.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900001880.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002750.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002760.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002780.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002790.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002810.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002820.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002830.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900002840.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900003530.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900003540.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900003630.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900004020.1 Terpenoid BAHD low borderline
Cretscaffold11345_cov920006440.1 Terpenoid BAHD medium pass
Cretscaffold1186_cov860011120.1 Terpenoid BAHD medium pass
Cretscaffold1186_cov860011220.1 Terpenoid BAHD medium pass
Cretscaffold11980_cov890012200.1 Terpenoid BAHD medium pass
Cretscaffold132_cov940017100.1 Terpenoid BAHD medium pass
Cretscaffold132_cov940017100.2 Terpenoid BAHD medium pass
Cretscaffold132_cov940017100.3 Terpenoid BAHD medium pass
Cretscaffold132_cov940017100.4 Terpenoid BAHD medium pass
Cretscaffold132_cov940017100.5 Terpenoid BAHD medium pass
Cretscaffold132_cov940017100.6 Terpenoid BAHD medium pass
Cretscaffold1382_cov810019890.1 Terpenoid BAHD medium pass
Cretscaffold14745_cov690022160.1 Terpenoid BAHD medium pass
Cretscaffold172_cov840025060.1 Terpenoid BAHD medium pass
Cretscaffold17579_cov1170026080.1 Terpenoid BAHD medium pass
Cretscaffold181_cov890027030.1 Terpenoid BAHD low borderline
Cretscaffold1831_cov860028330.1 Terpenoid BAHD medium pass
Cretscaffold1831_cov860028330.2 Terpenoid BAHD medium pass
Cretscaffold1831_cov860028330.3 Terpenoid BAHD medium pass
Cretscaffold2108_cov910032540.1 Terpenoid BAHD medium pass
Cretscaffold2108_cov910032550.1 Terpenoid BAHD medium pass
Cretscaffold2179_cov930033610.1 Terpenoid BAHD low borderline
Cretscaffold22_cov910035150.1 Terpenoid BAHD medium pass