PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold86066_cov840267470.1 Alkaloid CODM/T6ODM medium borderline
Cretscaffold86078_cov820270720.1 Alkaloid CODM/T6ODM medium borderline
Cretscaffold8841_cov910278990.1 Alkaloid CODM/T6ODM medium borderline
Cretscaffold983_cov880287960.1 Alkaloid CODM/T6ODM medium borderline
Cretscaffold1382_cov810019240.1 Alkaloid COR medium pass
Cretscaffold19092_cov540030490.1 Alkaloid COR medium pass
Cretscaffold26282_cov1210039540.1 Alkaloid COR medium pass
Cretscaffold276_cov890045240.1 Alkaloid COR medium pass
Cretscaffold276_cov890047810.1 Alkaloid COR medium pass
Cretscaffold346_cov870063130.1 Alkaloid COR medium pass
Cretscaffold440_cov850087930.1 Alkaloid COR medium pass
Cretscaffold440_cov850087960.1 Alkaloid COR medium pass
Cretscaffold440_cov850087970.1 Alkaloid COR medium pass
Cretscaffold440_cov850087970.2 Alkaloid COR medium pass
Cretscaffold440_cov850087980.1 Alkaloid COR medium pass
Cretscaffold440_cov850087980.2 Alkaloid COR medium pass
Cretscaffold440_cov850087990.1 Alkaloid COR medium pass
Cretscaffold440_cov850087990.2 Alkaloid COR medium pass
Cretscaffold440_cov850087990.3 Alkaloid COR medium pass
Cretscaffold440_cov850087990.4 Alkaloid COR medium pass
Cretscaffold4989_cov830097100.1 Alkaloid COR medium pass
Cretscaffold4989_cov830097110.1 Alkaloid COR medium pass
Cretscaffold573_cov840111250.1 Alkaloid COR medium pass
Cretscaffold63632_cov620115260.1 Alkaloid COR medium pass
Cretscaffold662_cov850116850.1 Alkaloid COR medium pass
Cretscaffold7384_cov800119330.1 Alkaloid COR medium pass
Cretscaffold85918_cov900165170.1 Alkaloid COR medium pass
Cretscaffold85924_cov870185500.1 Alkaloid COR medium pass
Cretscaffold85944_cov790200930.1 Alkaloid COR medium pass
Cretscaffold86051_cov840260800.1 Alkaloid COR medium pass
Cretscaffold86062_cov850264950.1 Alkaloid COR medium pass
Cretscaffold86062_cov850264950.2 Alkaloid COR medium pass
Cretscaffold86062_cov850264950.3 Alkaloid COR medium pass
Cretscaffold86066_cov840267140.1 Alkaloid COR medium pass
Cretscaffold94_cov720286840.1 Alkaloid COR medium pass
Cretscaffold94_cov720286840.2 Alkaloid COR medium pass
Cretscaffold94_cov720286880.1 Alkaloid COR medium pass
Cretscaffold22_cov910035530.1 Alkaloid CYP719 low borderline
Cretscaffold273_cov940041860.1 Alkaloid CYP719 medium borderline
Cretscaffold273_cov940041860.4 Alkaloid CYP719 medium borderline
Cretscaffold85923_cov900176880.1 Alkaloid CYP719 medium borderline
Cretscaffold86027_cov910232890.1 Alkaloid CYP719 medium borderline
Cretscaffold86027_cov910232890.3 Alkaloid CYP719 medium borderline
Cretscaffold86027_cov910238380.1 Alkaloid CYP719 medium borderline
Cretscaffold86027_cov910238400.1 Alkaloid CYP719 medium borderline
Cretscaffold86080_cov890272260.1 Alkaloid CYP719 medium borderline
Cretscaffold19332_cov890030620.1 Alkaloid CYP80B1 medium borderline
Cretscaffold273_cov940040310.1 Alkaloid CYP80B1 medium borderline
Cretscaffold3314_cov730061280.1 Alkaloid CYP80B1 medium borderline
Cretscaffold4070_cov900075360.1 Alkaloid CYP80B1 medium borderline