Citrus reticulata (citrus_reticulata)
Imported from atlas release summary for Citrus reticulata.
2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5786
Family-Level Calls
C4H
5.91%
BAHD
5.74%
C3'H/CYP98A
5.67%
CYP76
4.22%
IFS
3.98%
NMT
3.68%
4CL
3.58%
T3O
3.39%
Other Families
63.84%
More Families (96)
UGT
195
3.37%
POD
171
2.96%
7DLGT
168
2.9%
UFGT
167
2.89%
F3H
158
2.73%
DWF4/CYP90B1
149
2.58%
BR6OX2/CYP85A2
114
1.97%
COMT
113
1.95%
TPS
106
1.83%
GES
104
1.8%
CODM/T6ODM
103
1.78%
STR
101
1.75%
CAS
99
1.71%
F3'H/CYP75B
98
1.69%
CAD
87
1.5%
CYP71
82
1.42%
HCT
72
1.24%
RAS
64
1.11%
BBE
61
1.05%
IFR
61
1.05%
SMT1/SMT2/SMT3
60
1.04%
TRI/TRII
59
1.02%
G8O/G8H
58
1.0%
16OMT
56
0.97%
CYP90D1
56
0.97%
H6H
54
0.93%
T16H
47
0.81%
SGD
45
0.78%
TAT
45
0.78%
GS
39
0.67%
CSE
39
0.67%
PYKS
38
0.66%
F3'5'H/CYP75A
38
0.66%
IO
37
0.64%
COR
33
0.57%
PMT
32
0.55%
LAC
31
0.54%
GGPPS
31
0.54%
ISY
29
0.5%
CCR
29
0.5%
ANR
28
0.48%
FNS
28
0.48%
7DLH
27
0.47%
LAMT
26
0.45%
F5H/CYP84A
26
0.45%
CPD/CYP90A1
25
0.43%
NCS
23
0.4%
8HGO
18
0.31%
CYP51G1
18
0.31%
SLS
17
0.29%
CHS
17
0.29%
DFR
17
0.29%
CCoAOMT
17
0.29%
CNMT
16
0.28%
SQE
16
0.28%
MPO
15
0.26%
PAL
15
0.26%
AACT
14
0.24%
CPR
13
0.22%
ANS/LDOX
11
0.19%
CHI
11
0.19%
TYDC_DDC
10
0.17%
CYP80B1
10
0.17%
SQS/FDFT1
10
0.17%
CYP719
9
0.16%
BR6OX1/CYP85A1
9
0.16%
HPPR
8
0.14%
FPPS
8
0.14%
MVK
8
0.14%
TDC
6
0.1%
XMT_MXMT_DXMT
6
0.1%
HYD1
6
0.1%
ROT3/CYP90C1
6
0.1%
DXR
6
0.1%
ODC
5
0.09%
FLS
5
0.09%
DXS
5
0.09%
MCT/IspD
5
0.09%
SMO1/SMO2
4
0.07%
FK
4
0.07%
MVD
4
0.07%
ADC
3
0.05%
DWF7
3
0.05%
DET2
3
0.05%
CMK/IspE
3
0.05%
HDS/IspG
3
0.05%
HMGS
3
0.05%
HDR/IspH
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
CPI1
2
0.03%
PMK
2
0.03%
HMGR
2
0.03%
DWF1
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 681 | 19 | BAHD (278) | View species results |
| Alkaloid pathway | 615 | 23 | NMT (134) | View species results |
| Phenylpropanoid pathway | 481 | 12 | POD (160) | View species results |
| Flavonoid pathway | 242 | 12 | UFGT (142) | View species results |
| Rosmarinic acid pathway | 234 | 7 | C4H (96) | View species results |
| Steroid pathway | 170 | 13 | CAS (87) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2166 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 468 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cretscaffold849_cov840135030.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold85874_cov810139800.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold85874_cov810139810.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85874_cov810139820.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold85874_cov810139850.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold85899_cov890143210.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85899_cov890144820.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85899_cov890144820.2 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85909_cov900151730.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold85912_cov810160690.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85913_cov830161880.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85913_cov830161890.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85918_cov900164660.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold85918_cov900164670.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold85918_cov900167520.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold85918_cov900170780.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85918_cov900170790.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85918_cov900171500.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85923_cov900180600.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85923_cov900180600.2 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85923_cov900180600.3 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85924_cov870185340.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85935_cov930194910.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85935_cov930195700.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85935_cov930195710.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85969_cov760210390.2 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85969_cov760210390.4 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85969_cov760210390.5 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85969_cov760210470.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold85977_cov810215880.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86001_cov870224490.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86001_cov870224500.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86001_cov870224520.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold86001_cov870224540.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86001_cov870224540.2 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86014_cov1010225430.2 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| Cretscaffold86027_cov910229280.2 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86027_cov910229280.3 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86027_cov910230820.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86027_cov910233020.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86027_cov910233030.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86027_cov910235910.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86027_cov910236920.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86037_cov900244570.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86037_cov900244570.2 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86037_cov900244570.3 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86042_cov890252300.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86042_cov890252310.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86061_cov890263440.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| Cretscaffold86061_cov890263450.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |