PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Cretscaffold85933_cov910193150.4 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Cretscaffold85933_cov910193150.5 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Cretscaffold85933_cov910193160.1 Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
Cretscaffold85935_cov930195940.1 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85947_cov920201710.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85956_cov860204260.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85956_cov860204270.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85956_cov860204320.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85956_cov860204330.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85956_cov860204350.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85956_cov860204360.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85956_cov860204370.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold85969_cov760210810.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold86014_cov1010225400.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold86021_cov880226210.1 Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold86042_cov890252500.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold86048_cov930255150.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold86048_cov930255210.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
Cretscaffold86077_cov880270620.1 Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO