PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold535_cov910107880.3 Terpenoid MVK medium pass
Cretscaffold535_cov910107880.4 Terpenoid MVK medium pass
Cretscaffold535_cov910107880.5 Terpenoid MVK medium pass
Cretscaffold86027_cov910235370.1 Terpenoid MVK low borderline
Cretscaffold90_cov940285740.1 Terpenoid MVK low borderline
Cretscaffold480_cov830092560.1 Terpenoid PMK medium pass
Cretscaffold85926_cov560189970.1 Terpenoid PMK low borderline
Cretscaffold1057_cov730004840.1 Terpenoid TPS medium pass
Cretscaffold11262_cov1100005470.1 Terpenoid TPS medium pass
Cretscaffold11262_cov1100005470.2 Terpenoid TPS medium pass
Cretscaffold11439_cov810010480.1 Terpenoid TPS medium pass
Cretscaffold11439_cov810010490.1 Terpenoid TPS medium pass
Cretscaffold11439_cov810010510.1 Terpenoid TPS medium pass
Cretscaffold13235_cov1500013540.1 Terpenoid TPS medium pass
Cretscaffold132_cov940015290.1 Terpenoid TPS medium pass
Cretscaffold13921_cov780020350.1 Terpenoid TPS medium pass
Cretscaffold144_cov710020820.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021210.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021270.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021280.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021290.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021300.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021330.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021360.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021370.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021530.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021540.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021550.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021660.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021670.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021670.3 Terpenoid TPS medium pass
Cretscaffold146_cov780021680.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021700.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021720.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021750.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021780.1 Terpenoid TPS medium pass
Cretscaffold146_cov780021790.1 Terpenoid TPS medium pass
Cretscaffold146_cov780022080.1 Terpenoid TPS medium pass
Cretscaffold146_cov780022080.2 Terpenoid TPS medium pass
Cretscaffold146_cov780022080.3 Terpenoid TPS medium pass
Cretscaffold146_cov780022080.4 Terpenoid TPS medium pass
Cretscaffold1567_cov780023280.1 Terpenoid TPS medium pass
Cretscaffold16529_cov680024020.1 Terpenoid TPS medium pass
Cretscaffold19799_cov1200031130.1 Terpenoid TPS medium pass
Cretscaffold21121_cov450032700.1 Terpenoid TPS medium pass
Cretscaffold25123_cov950038880.1 Terpenoid TPS medium pass
Cretscaffold26108_cov1460039380.1 Terpenoid TPS medium pass
Cretscaffold26109_cov1150039390.1 Terpenoid TPS medium pass
Cretscaffold2667_cov720039870.1 Terpenoid TPS medium pass
Cretscaffold2882_cov880049150.1 Terpenoid TPS medium pass