PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold1027_cov900002020.3 Phenylpropanoid LAC medium pass
Cretscaffold11345_cov920006580.1 Phenylpropanoid LAC medium pass
Cretscaffold11345_cov920007640.1 Phenylpropanoid LAC medium pass
Cretscaffold11345_cov920008620.1 Phenylpropanoid LAC medium pass
Cretscaffold11345_cov920009860.1 Phenylpropanoid LAC medium pass
Cretscaffold11345_cov920009900.1 Phenylpropanoid LAC medium pass
Cretscaffold181_cov890027480.1 Phenylpropanoid LAC medium pass
Cretscaffold33997_cov770062370.1 Phenylpropanoid LAC medium pass
Cretscaffold429_cov910085690.1 Phenylpropanoid LAC medium pass
Cretscaffold429_cov910086830.1 Phenylpropanoid LAC medium pass
Cretscaffold440_cov850088440.1 Phenylpropanoid LAC medium pass
Cretscaffold440_cov850088450.1 Phenylpropanoid LAC medium pass
Cretscaffold440_cov850088450.2 Phenylpropanoid LAC medium pass
Cretscaffold440_cov850088480.1 Phenylpropanoid LAC medium pass
Cretscaffold499_cov790098270.1 Phenylpropanoid LAC medium pass
Cretscaffold514_cov870099980.1 Phenylpropanoid LAC medium pass
Cretscaffold514_cov870100320.1 Phenylpropanoid LAC medium pass
Cretscaffold514_cov870100360.1 Phenylpropanoid LAC medium pass
Cretscaffold514_cov870100370.1 Phenylpropanoid LAC medium pass
Cretscaffold514_cov870103090.1 Phenylpropanoid LAC medium pass
Cretscaffold85872_cov840138120.1 Phenylpropanoid LAC low borderline
Cretscaffold85872_cov840138130.1 Phenylpropanoid LAC low borderline
Cretscaffold85905_cov920147600.1 Phenylpropanoid LAC medium pass
Cretscaffold85923_cov900175930.1 Phenylpropanoid LAC medium pass
Cretscaffold85925_cov910187310.1 Phenylpropanoid LAC medium pass
Cretscaffold85925_cov910187310.2 Phenylpropanoid LAC medium pass
Cretscaffold85925_cov910187310.3 Phenylpropanoid LAC medium pass
Cretscaffold86027_cov910235310.1 Phenylpropanoid LAC medium pass
Cretscaffold86071_cov960268590.1 Phenylpropanoid LAC medium pass
Cretscaffold181_cov890027550.1 Phenylpropanoid PAL high pass
Cretscaffold181_cov890027570.1 Phenylpropanoid PAL high pass
Cretscaffold426_cov900078990.1 Phenylpropanoid PAL low borderline
Cretscaffold514_cov870102070.1 Phenylpropanoid PAL high pass
Cretscaffold85999_cov800223620.1 Phenylpropanoid PAL high pass
Cretscaffold1027_cov900000780.1 Phenylpropanoid POD medium pass
Cretscaffold1027_cov900001770.1 Phenylpropanoid POD medium pass
Cretscaffold1027_cov900002000.1 Phenylpropanoid POD medium pass
Cretscaffold11848_cov860010830.1 Phenylpropanoid POD medium pass
Cretscaffold1186_cov860011450.1 Phenylpropanoid POD medium pass
Cretscaffold1186_cov860011460.1 Phenylpropanoid POD medium pass
Cretscaffold12145_cov500012590.1 Phenylpropanoid POD medium pass
Cretscaffold1293_cov600013210.1 Phenylpropanoid POD medium pass
Cretscaffold1293_cov600013220.1 Phenylpropanoid POD medium pass
Cretscaffold132_cov940014400.1 Phenylpropanoid POD medium pass
Cretscaffold13534_cov910019000.1 Phenylpropanoid POD medium pass
Cretscaffold1382_cov810019590.1 Phenylpropanoid POD medium pass
Cretscaffold1382_cov810019590.2 Phenylpropanoid POD medium pass
Cretscaffold1382_cov810019590.3 Phenylpropanoid POD medium pass
Cretscaffold1382_cov810019590.4 Phenylpropanoid POD medium pass
Cretscaffold1382_cov810019590.5 Phenylpropanoid POD medium pass