PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold86042_cov890252550.1 Alkaloid LAMT medium borderline
Cretscaffold86042_cov890252560.1 Alkaloid LAMT medium borderline
Cretscaffold86042_cov890252570.1 Alkaloid LAMT medium borderline
Cretscaffold2964_cov920055370.1 Alkaloid MPO high pass
Cretscaffold85962_cov920207240.1 Alkaloid MPO medium pass
Cretscaffold85962_cov920207240.2 Alkaloid MPO medium pass
Cretscaffold85962_cov920207240.3 Alkaloid MPO medium pass
Cretscaffold85962_cov920207240.4 Alkaloid MPO medium pass
Cretscaffold85973_cov870212460.1 Alkaloid MPO medium pass
Cretscaffold85973_cov870212460.2 Alkaloid MPO medium pass
Cretscaffold85973_cov870212460.3 Alkaloid MPO medium pass
Cretscaffold85973_cov870212460.4 Alkaloid MPO medium pass
Cretscaffold85973_cov870212460.5 Alkaloid MPO medium pass
Cretscaffold85973_cov870212470.1 Alkaloid MPO high pass
Cretscaffold85973_cov870212500.1 Alkaloid MPO medium pass
Cretscaffold85973_cov870212510.1 Alkaloid MPO medium pass
Cretscaffold86027_cov910230310.1 Alkaloid MPO medium pass
Cretscaffold86027_cov910230320.1 Alkaloid MPO low borderline
Cretscaffold1027_cov900000670.1 Alkaloid NCS medium borderline
Cretscaffold276_cov890047790.1 Alkaloid NCS medium borderline
Cretscaffold3368_cov910062040.1 Alkaloid NCS medium borderline
Cretscaffold3368_cov910062050.1 Alkaloid NCS medium borderline
Cretscaffold39_cov910071150.1 Alkaloid NCS low borderline
Cretscaffold39_cov910071220.1 Alkaloid NCS low borderline
Cretscaffold39_cov910071290.1 Alkaloid NCS low borderline
Cretscaffold429_cov910084770.1 Alkaloid NCS medium borderline
Cretscaffold440_cov850088330.1 Alkaloid NCS medium borderline
Cretscaffold46437_cov810091590.1 Alkaloid NCS medium borderline
Cretscaffold6176_cov970114570.1 Alkaloid NCS medium borderline
Cretscaffold85821_cov790137230.1 Alkaloid NCS medium pass
Cretscaffold85918_cov900172300.1 Alkaloid NCS medium borderline
Cretscaffold85969_cov760210390.1 Alkaloid NCS medium borderline
Cretscaffold85969_cov760210390.3 Alkaloid NCS medium borderline
Cretscaffold85973_cov870213760.1 Alkaloid NCS low borderline
Cretscaffold86021_cov880226660.1 Alkaloid NCS medium pass
Cretscaffold86042_cov890252280.1 Alkaloid NCS medium borderline
Cretscaffold86042_cov890252280.2 Alkaloid NCS medium borderline
Cretscaffold86051_cov840260310.1 Alkaloid NCS medium borderline
Cretscaffold86051_cov840260310.2 Alkaloid NCS medium borderline
Cretscaffold86051_cov840260310.3 Alkaloid NCS medium borderline
Cretscaffold86051_cov840260310.4 Alkaloid NCS medium borderline
Cretscaffold1027_cov900003570.1 Alkaloid NMT medium pass
Cretscaffold1327_cov900013620.1 Alkaloid NMT medium borderline
Cretscaffold1327_cov900013650.1 Alkaloid NMT medium pass
Cretscaffold132_cov940017250.1 Alkaloid NMT medium pass
Cretscaffold132_cov940017250.10 Alkaloid NMT medium pass
Cretscaffold132_cov940017250.11 Alkaloid NMT medium pass
Cretscaffold132_cov940017250.12 Alkaloid NMT medium pass
Cretscaffold132_cov940017250.2 Alkaloid NMT medium pass
Cretscaffold132_cov940017250.3 Alkaloid NMT medium pass