PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Cretscaffold86027_cov910230300.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86027_cov910233950.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86027_cov910235150.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86027_cov910235530.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86027_cov910238380.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86027_cov910238390.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86027_cov910238410.2 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86027_cov910238420.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86027_cov910238450.1 Steroid BR6OX2/CYP85A2 medium borderline
Cretscaffold86029_cov910238800.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86030_cov920239740.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86030_cov920239770.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86030_cov920239790.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86035_cov920242660.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86041_cov890246430.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86041_cov890247130.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86042_cov890252120.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86055_cov850262780.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86063_cov860266020.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold86080_cov890272260.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold8841_cov910280910.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold8841_cov910280920.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold921_cov840286400.1 Steroid BR6OX2/CYP85A2 low borderline
Cretscaffold11262_cov1100005470.1 Steroid CAS medium pass
Cretscaffold11262_cov1100005470.2 Steroid CAS medium pass
Cretscaffold11345_cov920006520.1 Steroid CAS medium pass
Cretscaffold11439_cov810010490.1 Steroid CAS medium pass
Cretscaffold11439_cov810010510.1 Steroid CAS medium pass
Cretscaffold12210_cov850012630.1 Steroid CAS medium pass
Cretscaffold13235_cov1500013540.1 Steroid CAS medium pass
Cretscaffold132_cov940015290.1 Steroid CAS medium pass
Cretscaffold146_cov780021210.1 Steroid CAS medium pass
Cretscaffold146_cov780021290.1 Steroid CAS low borderline
Cretscaffold146_cov780021300.1 Steroid CAS medium pass
Cretscaffold146_cov780021330.1 Steroid CAS medium pass
Cretscaffold146_cov780021670.1 Steroid CAS medium pass
Cretscaffold146_cov780021670.3 Steroid CAS medium pass
Cretscaffold146_cov780021680.1 Steroid CAS medium pass
Cretscaffold146_cov780021700.1 Steroid CAS low borderline
Cretscaffold146_cov780021780.1 Steroid CAS low borderline
Cretscaffold146_cov780021790.1 Steroid CAS low borderline
Cretscaffold146_cov780022080.1 Steroid CAS medium pass
Cretscaffold146_cov780022080.2 Steroid CAS medium pass
Cretscaffold146_cov780022080.3 Steroid CAS medium pass
Cretscaffold146_cov780022080.4 Steroid CAS medium pass
Cretscaffold172_cov840025460.1 Steroid CAS medium pass
Cretscaffold172_cov840025460.2 Steroid CAS medium pass
Cretscaffold172_cov840025760.1 Steroid CAS medium pass
Cretscaffold19799_cov1200031130.1 Steroid CAS medium pass
Cretscaffold21121_cov450032700.1 Steroid CAS medium pass