PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold85994_cov870221900.1 Alkaloid 7DLGT medium pass
Cretscaffold86012_cov790225130.1 Alkaloid 7DLGT high pass
Cretscaffold86014_cov1010225300.1 Alkaloid 7DLGT medium pass
Cretscaffold86014_cov1010225330.1 Alkaloid 7DLGT medium pass
Cretscaffold86019_cov820225900.1 Alkaloid 7DLGT medium pass
Cretscaffold86027_cov910234190.1 Alkaloid 7DLGT low borderline
Cretscaffold86027_cov910234840.1 Alkaloid 7DLGT medium pass
Cretscaffold86027_cov910234860.1 Alkaloid 7DLGT medium pass
Cretscaffold86035_cov920241200.1 Alkaloid 7DLGT low borderline
Cretscaffold86042_cov890248970.1 Alkaloid 7DLGT medium pass
Cretscaffold86042_cov890249580.1 Alkaloid 7DLGT low borderline
Cretscaffold86048_cov930257790.1 Alkaloid 7DLGT low borderline
Cretscaffold867_cov800275550.1 Alkaloid 7DLGT medium pass
Cretscaffold867_cov800275570.1 Alkaloid 7DLGT low borderline
Cretscaffold867_cov800275580.1 Alkaloid 7DLGT low borderline
Cretscaffold867_cov800275590.1 Alkaloid 7DLGT medium pass
Cretscaffold8841_cov910278510.1 Alkaloid 7DLGT low borderline
Cretscaffold8841_cov910278670.1 Alkaloid 7DLGT medium pass
Cretscaffold8841_cov910282170.1 Alkaloid 7DLGT low borderline
Cretscaffold88754_cov2340283520.1 Alkaloid 7DLGT medium pass
Cretscaffold895_cov880284860.1 Alkaloid 7DLGT medium pass
Cretscaffold895_cov880284870.1 Alkaloid 7DLGT high pass
Cretscaffold895_cov880284880.1 Alkaloid 7DLGT high pass
Cretscaffold895_cov880284890.1 Alkaloid 7DLGT medium pass
Cretscaffold90_cov940286250.1 Alkaloid 7DLGT medium pass
Cretscaffold90_cov940286250.2 Alkaloid 7DLGT medium pass
Cretscaffold11345_cov920007510.1 Alkaloid 7DLH medium borderline
Cretscaffold132_cov940016280.1 Alkaloid 7DLH low borderline
Cretscaffold276_cov890046130.1 Alkaloid 7DLH medium borderline
Cretscaffold294_cov920051370.1 Alkaloid 7DLH medium borderline
Cretscaffold294_cov920051370.2 Alkaloid 7DLH medium borderline
Cretscaffold514_cov870103580.1 Alkaloid 7DLH low borderline
Cretscaffold70996_cov990118550.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130320.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130340.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130440.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130470.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130480.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130500.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130510.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130510.2 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130520.1 Alkaloid 7DLH medium borderline
Cretscaffold835_cov910130530.1 Alkaloid 7DLH medium borderline
Cretscaffold85899_cov890145720.1 Alkaloid 7DLH medium borderline
Cretscaffold85909_cov900150720.1 Alkaloid 7DLH medium borderline
Cretscaffold85913_cov830161760.1 Alkaloid 7DLH medium borderline
Cretscaffold85938_cov950197480.1 Alkaloid 7DLH medium borderline
Cretscaffold86030_cov920240190.1 Alkaloid 7DLH medium borderline
Cretscaffold86035_cov920242660.1 Alkaloid 7DLH medium borderline
Cretscaffold86048_cov930257720.1 Alkaloid 7DLH medium borderline