PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Cretscaffold867_cov800275230.1 Alkaloid 7DLH medium borderline
Cretscaffold867_cov800275230.2 Alkaloid 7DLH medium borderline
Cretscaffold8841_cov910282310.1 Alkaloid 7DLH medium borderline
Cretscaffold132_cov940017510.1 Alkaloid 8HGO medium borderline
Cretscaffold132_cov940017510.2 Alkaloid 8HGO medium borderline
Cretscaffold276_cov890046370.1 Alkaloid 8HGO medium borderline
Cretscaffold35463_cov1420063740.1 Alkaloid 8HGO medium borderline
Cretscaffold514_cov870103590.1 Alkaloid 8HGO medium borderline
Cretscaffold514_cov870103610.1 Alkaloid 8HGO low borderline
Cretscaffold514_cov870103630.1 Alkaloid 8HGO medium borderline
Cretscaffold514_cov870103630.2 Alkaloid 8HGO medium borderline
Cretscaffold7875_cov570121320.1 Alkaloid 8HGO medium borderline
Cretscaffold7875_cov570121330.1 Alkaloid 8HGO medium borderline
Cretscaffold85905_cov920147900.1 Alkaloid 8HGO medium borderline
Cretscaffold86027_cov910238700.1 Alkaloid 8HGO medium borderline
Cretscaffold86027_cov910238710.1 Alkaloid 8HGO medium borderline
Cretscaffold86048_cov930255430.1 Alkaloid 8HGO medium borderline
Cretscaffold8841_cov910278800.1 Alkaloid 8HGO medium borderline
Cretscaffold8841_cov910278800.2 Alkaloid 8HGO medium borderline
Cretscaffold8841_cov910278800.3 Alkaloid 8HGO medium borderline
Cretscaffold8841_cov910278810.1 Alkaloid 8HGO medium borderline
Cretscaffold4989_cov830097080.1 Alkaloid ADC medium pass
Cretscaffold85933_cov910193070.3 Alkaloid ADC low borderline
Cretscaffold85933_cov910193070.4 Alkaloid ADC low borderline
Cretscaffold10892_cov730005230.1 Alkaloid BBE medium borderline
Cretscaffold11980_cov890012210.1 Alkaloid BBE medium borderline
Cretscaffold11980_cov890012320.1 Alkaloid BBE medium borderline
Cretscaffold11980_cov890012330.1 Alkaloid BBE medium borderline
Cretscaffold11980_cov890012340.1 Alkaloid BBE medium borderline
Cretscaffold11980_cov890012350.1 Alkaloid BBE medium borderline
Cretscaffold1382_cov810020110.1 Alkaloid BBE medium borderline
Cretscaffold172_cov840024750.1 Alkaloid BBE medium borderline
Cretscaffold172_cov840024760.1 Alkaloid BBE medium borderline
Cretscaffold26598_cov1010039810.1 Alkaloid BBE medium borderline
Cretscaffold52546_cov1040106850.1 Alkaloid BBE medium borderline
Cretscaffold53764_cov720108250.1 Alkaloid BBE medium borderline
Cretscaffold6021_cov1170113420.1 Alkaloid BBE medium borderline
Cretscaffold80800_cov870122420.1 Alkaloid BBE medium borderline
Cretscaffold81731_cov860123860.1 Alkaloid BBE medium borderline
Cretscaffold82639_cov1530125560.1 Alkaloid BBE medium borderline
Cretscaffold83654_cov1660130840.1 Alkaloid BBE medium borderline
Cretscaffold85909_cov900152940.1 Alkaloid BBE low borderline
Cretscaffold85909_cov900152940.2 Alkaloid BBE low borderline
Cretscaffold85909_cov900152940.3 Alkaloid BBE low borderline
Cretscaffold85909_cov900152940.4 Alkaloid BBE low borderline
Cretscaffold85909_cov900152940.5 Alkaloid BBE low borderline
Cretscaffold85909_cov900159560.1 Alkaloid BBE medium borderline
Cretscaffold85909_cov900159580.1 Alkaloid BBE medium borderline
Cretscaffold85909_cov900159600.1 Alkaloid BBE medium borderline
Cretscaffold85909_cov900159610.1 Alkaloid BBE medium borderline