PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2423
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Cretscaffold85913_cov830161770.1 Alkaloid BBE medium borderline
Cretscaffold85931_cov990191990.1 Alkaloid BBE medium borderline
Cretscaffold85931_cov990192470.1 Alkaloid BBE medium borderline
Cretscaffold85935_cov930195650.1 Alkaloid BBE medium borderline
Cretscaffold85935_cov930195650.2 Alkaloid BBE medium borderline
Cretscaffold85940_cov860200670.1 Alkaloid BBE medium borderline
Cretscaffold85940_cov860200690.1 Alkaloid BBE medium borderline
Cretscaffold85974_cov870215300.1 Alkaloid BBE medium borderline
Cretscaffold85984_cov880219280.1 Alkaloid BBE low borderline
Cretscaffold86001_cov870224160.1 Alkaloid BBE low borderline
Cretscaffold86001_cov870224160.2 Alkaloid BBE low borderline
Cretscaffold86012_cov790225240.1 Alkaloid BBE medium borderline
Cretscaffold86012_cov790225240.2 Alkaloid BBE medium borderline
Cretscaffold86012_cov790225240.3 Alkaloid BBE medium borderline
Cretscaffold86029_cov910238850.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248010.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248020.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248030.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248040.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248040.2 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248080.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248090.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248100.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248110.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248120.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248130.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248140.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248150.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248160.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248170.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248180.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248200.1 Alkaloid BBE medium borderline
Cretscaffold86042_cov890248210.1 Alkaloid BBE medium borderline
Cretscaffold86603_cov2840274820.1 Alkaloid BBE medium borderline
Cretscaffold86705_cov2380274890.1 Alkaloid BBE medium borderline
Cretscaffold12078_cov940012510.1 Alkaloid CNMT medium pass
Cretscaffold1327_cov900013910.1 Alkaloid CNMT low borderline
Cretscaffold1447_cov600020730.1 Alkaloid CNMT medium pass
Cretscaffold2270_cov840034250.2 Alkaloid CNMT low borderline
Cretscaffold276_cov890044570.1 Alkaloid CNMT low borderline
Cretscaffold294_cov920051000.1 Alkaloid CNMT medium borderline
Cretscaffold294_cov920051000.2 Alkaloid CNMT medium borderline
Cretscaffold294_cov920051000.3 Alkaloid CNMT medium borderline
Cretscaffold294_cov920051000.4 Alkaloid CNMT medium borderline
Cretscaffold514_cov870099530.1 Alkaloid CNMT low borderline
Cretscaffold514_cov870099530.2 Alkaloid CNMT low borderline
Cretscaffold514_cov870099530.3 Alkaloid CNMT low borderline
Cretscaffold514_cov870099530.5 Alkaloid CNMT low borderline
Cretscaffold85909_cov900157580.1 Alkaloid CNMT low borderline
Cretscaffold85940_cov860199110.1 Alkaloid CNMT low borderline