PlantSME Plant secondary metabolism enzyme database

Citrus reticulata (citrus_reticulata)

Imported from atlas release summary for Citrus reticulata.

2792
Candidate Protein Records
2423
Pathway-Level Records
5786
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 681 19 BAHD (278) View species results
Alkaloid pathway 615 23 NMT (134) View species results
Phenylpropanoid pathway 481 12 POD (160) View species results
Flavonoid pathway 242 12 UFGT (142) View species results
Rosmarinic acid pathway 234 7 C4H (96) View species results
Steroid pathway 170 13 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 468 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cretscaffold86027_cov910236430.1 Terpenoid BAHD medium pass
Cretscaffold86027_cov910236490.1 Terpenoid BAHD medium pass
Cretscaffold86027_cov910236520.1 Terpenoid BAHD medium pass
Cretscaffold86027_cov910236990.1 Terpenoid BAHD medium pass
Cretscaffold86027_cov910238550.1 Terpenoid BAHD medium pass
Cretscaffold86030_cov920239260.1 Terpenoid BAHD low borderline
Cretscaffold86030_cov920240390.1 Terpenoid BAHD medium pass
Cretscaffold86042_cov890248940.1 Terpenoid BAHD medium pass
Cretscaffold86042_cov890251730.1 Terpenoid BAHD low borderline
Cretscaffold86042_cov890252500.1 Terpenoid BAHD medium pass
Cretscaffold86042_cov890252800.1 Terpenoid BAHD medium pass
Cretscaffold86048_cov930254790.1 Terpenoid BAHD medium pass
Cretscaffold86048_cov930254790.2 Terpenoid BAHD medium pass
Cretscaffold86048_cov930255150.1 Terpenoid BAHD medium pass
Cretscaffold86048_cov930255200.1 Terpenoid BAHD low borderline
Cretscaffold86048_cov930255210.1 Terpenoid BAHD medium pass
Cretscaffold86048_cov930256620.1 Terpenoid BAHD medium pass
Cretscaffold86048_cov930256620.2 Terpenoid BAHD medium pass
Cretscaffold86048_cov930256620.3 Terpenoid BAHD medium pass
Cretscaffold86048_cov930257070.1 Terpenoid BAHD medium pass
Cretscaffold86048_cov930257770.1 Terpenoid BAHD medium pass
Cretscaffold86048_cov930257770.2 Terpenoid BAHD medium pass
Cretscaffold86048_cov930257770.3 Terpenoid BAHD medium pass
Cretscaffold86048_cov930258350.1 Terpenoid BAHD medium pass
Cretscaffold86048_cov930258360.2 Terpenoid BAHD low borderline
Cretscaffold86048_cov930258970.1 Terpenoid BAHD low borderline
Cretscaffold86060_cov950263110.1 Terpenoid BAHD medium pass
Cretscaffold86062_cov850264480.1 Terpenoid BAHD medium pass
Cretscaffold86062_cov850264570.1 Terpenoid BAHD medium pass
Cretscaffold86063_cov860265420.1 Terpenoid BAHD medium pass
Cretscaffold86063_cov860265420.2 Terpenoid BAHD medium pass
Cretscaffold86066_cov840267370.1 Terpenoid BAHD medium pass
Cretscaffold86077_cov880270620.1 Terpenoid BAHD medium pass
Cretscaffold86082_cov970272440.1 Terpenoid BAHD medium pass
Cretscaffold86822_cov2010275810.1 Terpenoid BAHD medium pass
Cretscaffold88262_cov2120276750.1 Terpenoid BAHD medium pass
Cretscaffold8841_cov910277980.1 Terpenoid BAHD medium pass
Cretscaffold8841_cov910279520.1 Terpenoid BAHD low borderline
Cretscaffold8841_cov910280420.1 Terpenoid BAHD medium pass
Cretscaffold8841_cov910280430.1 Terpenoid BAHD medium pass
Cretscaffold8841_cov910280440.1 Terpenoid BAHD medium pass
Cretscaffold8841_cov910282340.1 Terpenoid BAHD low borderline
Cretscaffold88624_cov1810283480.1 Terpenoid BAHD medium pass
Cretscaffold89943_cov2690285250.1 Terpenoid BAHD medium pass
Cretscaffold90_cov940286160.1 Terpenoid BAHD medium pass
Cretscaffold9544_cov1300287280.1 Terpenoid BAHD medium pass
Cretscaffold1027_cov900001900.1 Terpenoid CMK/IspE high pass
Cretscaffold14153_cov1010020440.1 Terpenoid CMK/IspE low borderline
Cretscaffold37456_cov870064860.1 Terpenoid CMK/IspE low borderline
Cretscaffold1027_cov900004390.1 Terpenoid CYP71 medium borderline